BAC Information

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BAC

Clone NameMSMg01-339M24
Chromosome6 (Build37)
Map Location 62,522,583 - 62,522,973
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339M24.T7 (MSMg01no339_m24.b1)MSMg01-339M24.TJ (MSMg01no339_m24.g1)
ACCAG454005AG454006
length865746
length of high quality
(start - end)
---393 (59 - 451)
definitionCHROMAT_FILE: MSMg01no339_m24.b1 PHD_FILE: MSMg01no339_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:44 2005CHROMAT_FILE: MSMg01no339_m24.g1 PHD_FILE: MSMg01no339_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGAAGATAAGATCNAGCAGCCACTGTATACGCTANGGTCCGCTCNANNT
CTTTGNTTTACCCTGACCCCCATTTTTTAATGGGGGNTAATCTGATTTTC
TGGGATCCCACCTTNCCTGAGTTCCTTAAATAAATTGGGAAATTAANCCC
CCTATCTGATTTAANTTAAGGNAAAGAACCCTTTCCCAAATTTGTTGGGG
CGTTTTTTTGCCTTAAGAGAGGGGGCCTTTGCCCTTAAAAAACTTTTCCC
NTTTTAAAAACCCCCTTTTTGGGATTTCCCGATTTTTAAACCCCCCCCTT
TGGGTTCAAAAAAAAAAATTTCCCCGGTTTTTTTTTCCAAGGGTTTCCCC
CCCCCCCCCCCAAAAAATCGCGCGGCCCCTATATTTGGGGGGGCCCCCCC
CCCCCTTTTTTTTTGCCCCACCCCCCACAAAAAAGAGGGGGAAAAAATTT
CCTTTCTCGCAAAAAACCCCCCCCCCACCCCACCACCGGAAAAAAAAAAG
ACTTCTTTTTCTTTTCCGGGTTTTCCCCCCCTCCCATACAAAAAAAAAAA
AAAAAAAAANNNNNAANTNNNNNTCCTCNCTTCCCTCTCCCGGGCGGTCT
CCTCTTTTTTCTTCCCCCCCCCCTCCCCCCCTTCTTCCTTCTTCCCCCCC
CTCTCTTTTTTTGTTTTTTTTCCNCCCCCCCCCCCCCCCCAAACCCNNNT
NAAACAAAACATACCTCACATCCTCCCCCCCTCATNTTTTCTCCTCTCCC
CTTCCCCCTCCCCACCCCTTCTCCCCCCCCCCTTTCTCTCATTTCTTTCC
CCTTTTTTTCCCTCTTTTCTTTCTCCCCCCCCCTCCCTCCTCCCTTGTTG
GGGGCGGTGGGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTTAGTAGAGATTTAACTCTTTAACTTTTTGACTGTAGCTA
TTCAAACAGCTATAAAAATGCCTGAGAACACACTGAATAACAAATACAGT
ATCTGACTTCCGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATACCATCACTTATGAAAATTTCTTCCCTGGGGGAAAGA
AACTAAGAAATGATTGACCCCTCTTTATAAGATCTAAATGACAAAGAAAA
GTTCAATTTCTTAGAATTTATACCTTGTGAAACCTGGGATTTTATCTGGC
ATACTTATAGAATATAAGCAGGGTCTTACTGAAAGGACCACATGTGATTC
AAAGGCAGCCTCCCTGGAAAGTCCTCATTCAGAATGAATGGCTTCCTCAT
AGCTGCATTGATAGAGTCTCTACTCCTCTACTCTTTTTGCAAAATATGCT
TTGGATCCTCCCCAAGATCACAAATACTTTATGGATTAGGACAAACCTGC
CATAATTCCTTTGAGGAAAGGTTTTGATATTCCAAGGAGGTCCCATGATT
GTGTAAAGAATTTTTTTTATAAATGGTTGGCAAAAGTGATAATCCCCATG
GGTGTGATTTTTTAACAAACCCCCTTTATTTTCTAGACTGGGGTTTTTCC
CCTCAAAAATATCCGTTTCCCCACCTTTTTTTTTTTAAACATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_m24.g1 MSMg01no339_m24.g1 CHROMAT_FILE:
MSMg01no339_m24.g1 PHD_FILE: MSMg01no339_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:44 2005
         (393 letters)



>mm_chr6_62522383_62523175
          Length = 793

 Score =  725 bits (375), Expect = 0.0
 Identities = 388/393 (98%), Gaps = 2/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagtagagatttaactctttaactttttgactgtagctattcaaacagctataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttagtagagatttaactctttaactttttgactgtagctattcaaacagctataaaaa 260

                                                                       
Query: 61  tgcctgagaacacactgaataacaaatacagtatctgacttccgtgtgtgtgtgtctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 261 tgcctgagaacacactgaataacaaatacagtatctgacttccgtgtgtgtgtg--tgtg 318

                                                                       
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataccatcacttatgaaaatttcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataccatcacttatgaaaatttcttcc 378

                                                                       
Query: 181 ctgggggaaagaaactaagaaatgattgacccctctttataagatctaaatgacaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgggggaaagaaactaagaaatgattgacccctctttataagatctaaatgacaaagaa 438

                                                                       
Query: 241 aagttcaatttcttagaatttataccttgtgaaacctgggattttatctggcatacttat 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagttcaatttcaaagaatttataccttgtgaaacctgggattttatctggcatacttat 498

                                                                       
Query: 301 agaatataagcagggtcttactgaaaggaccacatgtgattcaaaggcagcctccctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agaatataagcagggtcttactgaaaggaccacatgtgattcaaaggcagcctccctgga 558

                                            
Query: 361 aagtcctcattcagaatgaatggcttcctcata 393
           |||||||||||||||||||||||||||| ||||
Sbjct: 559 aagtcctcattcagaatgaatggcttccccata 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)