BAC Information

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BAC

Clone NameMSMg01-339N23
Chromosome6 (Build37)
Map Location 3,340,586 - 3,341,066
singlet/doubletsinglet
Overlap geneSamd9l
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335
Downstream geneAI987662, Ccdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339N23.T7 (MSMg01no339_n23.b1)MSMg01-339N23.TJ (MSMg01no339_n23.g1)
ACCAG454050AG454051
length732672
length of high quality
(start - end)
537 (75 - 611)---
definitionCHROMAT_FILE: MSMg01no339_n23.b1 PHD_FILE: MSMg01no339_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:48 2005CHROMAT_FILE: MSMg01no339_n23.g1 PHD_FILE: MSMg01no339_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCCGCGG
AATTCTGCACTATACCCATCAGAATTATTTAATAATGATGAATTCATAAG
GCTTCTAATGACACAATTTTGGCATATAACCTTACCCTGGCAGCCTAGCC
AAGGTGGATGCAGGTTCTTAAAAACAAATATCAATTCTCATGAAACATAC
CATACAATAACTATTTCTATATACATATATGCATTTTAAAGAGTGAATAC
ACACATTAAAGAGGTTGCAGCAGAGTTCTAATAGTTTCACCAGTGATCTG
AGAGATAGTCTTTATTGGTAAACTGTAGCATGTAGTTTTATGATCTAGTT
ACCTTTAGCTCTGAGAGGTGACTGTGCTACCAGCCCCCACCTGGCTTCAC
TTGAATCCTTGGAATAAAGACATAGACCCACCGTTTTTCAATTACACCTG
GCCTGGCACAATAGCTGGGCATTATTATTTCCTGCTTTGAAAAGAGTGTC
CTTACCAATTTCTTATCTCCATCTCTCCACTTGCCTTAAACTTTAGTTTT
TAAACTCCCCTGACCACCGACTTGTTGGAGTGGCCACTGTGGCCACTCTG
TTTTGAGATCAAATTTAAATGCTACAATGTGATTAAGTCATATAAGTCAA
ACTTACCTTTCCAAGCTGTATTTGGGAACTATTTTATCATAGCAGCAAAA
ATCAACCTAGGATAGAAATTTGTACCCAAGAG
AAAATGCAGTTCGGATGACTGTGGAGTAGTTCGTGATCTCCTGAGAACNA
TGTTANNACCTGAAATGTCACGTCTTATCTCGGAAATGAATCAACAACTG
AAATCCCTCACCCTCACATGCTAGATAAAATTCGGGAAACAAAGTGGGCG
GATGGAAAAAGAGGAACCCCTCCTTGGGAGGGATGGGGTTTGAACCCCTT
GAAAAAACGGGGGGGTCCCCAATTTTGTAATATTATCCGGGGAGACCAAA
AACTCTTGGGGGTTTTTACAAAAACCCCCCTTGTAAAAAAAACCCCCCCT
TTTCTCCTTTTTTAAAAATTTTAAAATTTTTTTTTAAAAAAAAAAAACCC
CTTTTTTTTGTAAATGGGGGGGGGGGGGCCCCTTTTTTTTAAAAAATTTT
TTTTTTTTAAATAAAAAAAAAAAAAAGGGGAGAACCCCCTTTTCCCAAAA
AACCCTCCAAAAAAAAAAACACACCACAAAAAACNGNGGGGGCCCCCCCC
CCCCTCTCTCTTTTTNNCGANNNNNNNATTNNNNNNNNNNNNNNNNNNNN
NTTTCCCCCTCTCCCCTCCTCCCCTNCACCACACCAAACTACTTTAAATT
CTCCCACANAACAAAAAAACACACCCCNCCACCCTCTCTTCCCCTCATCC
TTTTTATTTTTGGTTTGGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_n23.b1 MSMg01no339_n23.b1 CHROMAT_FILE:
MSMg01no339_n23.b1 PHD_FILE: MSMg01no339_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:48 2005
         (537 letters)



>mm_chr6_3340583_3341519
          Length = 937

 Score =  746 bits (386), Expect = 0.0
 Identities = 455/482 (94%), Gaps = 9/482 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatttaataatgatgaattcataaggc-------ttctaatgacacaattttggcatat 53
           ||||||||||||||| ||||| ||||||       ||||||||||||||||||| ||| |
Sbjct: 484 ttatttaataatgataaattcctaaggcttattggttctaatgacacaattttgtcatgt 425

                                                                       
Query: 54  aaccttaccctggcagcctagccaaggtggatgcaggttcttaaaaacaaatatcaattc 113
           ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 424 aaccttaccctagcagcctagccaaggtagatgcaggttcttaaaaacaaatattaattc 365

                                                                       
Query: 114 tcatgaaacataccatacaataactatttctatatacatatatgcattttaaagagtgaa 173
           ||||| |||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 tcatggaacagagcatacaataactatttctatatacatatatgcagtttaaagagtgaa 305

                                                                       
Query: 174 tacacacattaaagaggttgcagcagagttctaatagtttcaccagtgatctgagagata 233
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 304 tacacacattaaagaggttgcagcagagttctaagagtttcaccagtgatctgagagata 245

                                                                       
Query: 234 gtctttattggtaaactgtagcatgtagttttatgatctagttacctttagctctgagag 293
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 244 gtctttattggtaaaccgtagcatgtagttttatgatctagtcacctttagctctgagag 185

                                                                       
Query: 294 gtgactgtgctaccagcccccacctggcttcacttgaatccttggaataaagacatagac 353
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 184 gtgactgtgctaccagcccccacctggcttcacttgaatccttggactaaagacatagac 125

                                                                       
Query: 354 ccaccgtttttcaattacacctggcctggcacaatagctgggcattattatttcctgctt 413
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ccaccgttttccaattacacctggcctggcacaatagctgggcattattatttcctgctt 65

                                                                       
Query: 414 tgaaaagagtgtcc-ttaccaatttcttatctccatctctccacttgccttaaactttag 472
            |||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 64  cgaaaagagtg-cctttaccaatttcttatctccatctctccacttgccttaaacttcag 6

             
Query: 473 tt 474
           ||
Sbjct: 5   tt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)