Query= MSMg01no340_b13.b1 MSMg01no340_b13.b1 CHROMAT_FILE:
MSMg01no340_b13.b1 PHD_FILE: MSMg01no340_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:04 2005
(583 letters)
>mm_chr6_106000237_106001220
Length = 984
Score = 924 bits (478), Expect = 0.0
Identities = 537/580 (92%), Gaps = 38/580 (6%)
Strand = Plus / Plus
Query: 5 gaattccattaaat-aatattattactgttcttattttaccagtgggaagtttaggcagg 63
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattaaataaatactattactgttcttattttaccagtgggaagtttaggcagg 264
Query: 64 gatttgggtactttgtatttagttgaacattactgatgctggattcaaactaatgtagcc 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtttgggtactttgtatttagttgaacattactgatgctggattcaaactaatgtagcc 324
Query: 124 aaatttcagagtttgatctgggccctttcttccttgtgcagtgtaagcatgtaggacaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatttcagagtttgatctgggccctttcttccttgtgcagtgtaagcatgtaggacaag 384
Query: 184 tagtcatttgtcagtatatatatatatatatatatatatatatatatatatatatatata 243
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtcatttgtcagtatatatatatatatatatatatatat------------------- 425
Query: 244 tatatatatatatattagtttggtcaagtatcttctaataatttacaacacactatgtca 303
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 -----------------gtttggtcaagtatcctctaataatttacaacacactatgtca 468
Query: 304 caaaatatctatagttaagttaaactagcaatgtcatcgatattactattactgacattt 363
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 469 caaaatatctatagttaagttaaa-tagcaatgccatcgatattactattactgacattt 527
Query: 364 tacatatatcagggaagtgtttaaatgtgagtttttaagaatgtttattattgttgttcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tacatatatcagggaagtgtttaaatgtgagtttttaagaatgtttattattgttgttcc 587
Query: 424 acctatagggttgcagatccctttagctccttgggtactttctctagctcctccattggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acctatagggttgcagatccctttagctccttgggtactttctctagctcctccattggg 647
Query: 484 ggccctgtgatccatccaatagctgagtgtgagcatccacttctgtgtttgctaggcccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggccctgtgatccatccaatagctgagtgtgagcatccacttctgtgtttgctaggcccc 707
Query: 544 agcatagcctcacaagtgatagttatatcagggtcctttc 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggcatagcctcacaagtgatagttatatcagggtcctttc 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_b13.g1 MSMg01no340_b13.g1 CHROMAT_FILE:
MSMg01no340_b13.g1 PHD_FILE: MSMg01no340_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:04 2005
(595 letters)
>mm_chr6_106148250_106149244
Length = 995
Score = 975 bits (504), Expect = 0.0
Identities = 518/524 (98%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 1 actatgaaaagagataatcaaatgttggagcacactggcttagaaacctcagtttagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 actatgaaaagagataatcaaatgttggagcacactggcttagaaacctcagtttagata 465
Query: 61 tagccccaggattctacatttgtaggatctgaaaatttaagtgttagaattaatttctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagccccaggattctacatttgtaggatctgaaaatttaagtgttagaattaatttctag 405
Query: 121 aagtatttggtgctcatagataggagagtggtatctttgggtatttatctcaataatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagtatttggtgctcatagataggagagtggtatctttgggtatttatctcaataatttt 345
Query: 181 catggaaacagtaaagatcaaaattccatactgattcataatcagtgaacaaagtttata 240
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 344 catggaaacaataaagatcaaaattccatactgactcataatcagtgaacaaagtttata 285
Query: 241 tttacataaaattaataaattcactttaatttttacagatttactgaatttaagataaag 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttacgtaaaattaataaattcactttaatttttacagatttactgaatttaagataaag 225
Query: 301 tttaaataataaatccatttgtatgcaatggtggcacaaacctttaattccagcactcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tttaaataataaatccatttgtatgcaatggtggcacaaacctttaattccagcactcag 165
Query: 361 gaggcagagaggaaggtgaatctgagttcaaagccagcctggtctatagagtgaatttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gaggcagagaggaaggtgaatctgagttcaaagccagcctggtctatagagtgaatttca 105
Query: 421 gggcagcccaggctacacaaagaaaccctattttaaaaaatctaaagaaataaatatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gggcagcccaggctacacaaagaaaccctattttaaaaaatctaaagaaataaatatact 45
Query: 481 aacaattatgaatataattgataacctttc---cttctctcatc 521
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 44 aacaattatgaatataattgataacctttccttcttctctcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
