Query= MSMg01no340_b15.b1 MSMg01no340_b15.b1 CHROMAT_FILE:
MSMg01no340_b15.b1 PHD_FILE: MSMg01no340_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:04 2005
(554 letters)
>mm_chr6_106691369_106692322
Length = 954
Score = 994 bits (514), Expect = 0.0
Identities = 541/551 (98%), Gaps = 4/551 (0%)
Strand = Plus / Minus
Query: 5 gaattctacatttattgtaaaatttattgactgagccacctccacagcttgtttaccaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaattctacatttattgtaaaatttattgactgagccacctccacagcttgtttaccaac 548
Query: 65 ttttgaagtgtaatgtatgtgatagtactgtttacatacctccaaaactgtcaatcaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttttgaagtgtaatgtatgtgatagtactgtttacatacctccaaaactgtcaatcaaac 488
Query: 125 cagaaggaaattgtgagcaaaatggtacaaggctcagcaaagccaaggttaaggtcaagt 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 487 cagaaggaaattgtgagcaaaatggtacaaggctccgcaaagccaaggttaaggtaaagt 428
Query: 185 tcatgtactatgttatgggtcttaagttgactt-ttaagagtctctgatttatggtaggg 243
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 427 tcatgtactatgttatgggtcttaagttgacttctt-agagtctctgatttatggtaggg 369
Query: 244 atgtagtaacatgactgccacgtattgcatttgtagtaaggtgaaagaaagggaggtgca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgtagtaacatgactgccacgtattgcatttgtagtaaggtgaaagaaagggaggtgca 309
Query: 304 atttgtattaaccattttccagtaaatatgaaattttaaaggatttcatgtcaagaagtt 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atttgtattaaccattttgcagtaaatatgaaattttaaaggatttcatgtcaagaagtt 249
Query: 364 gctcctggagaggagactggcatcaaagatgagaataaaagacaacttgggaggcagaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctcctggagaggagactggcatcaaagatgagaataaaagacaacttgggaggcagaga 189
Query: 424 caggtgggtctgtgagttcaaagctagcccgaactacagagtgtgttcaaggagagccag 483
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 188 caggtgggtctgtgagttcaaagctagcccgaactacagagtatgttcaaggagagccag 129
Query: 484 gactacccagaaaaaaaaaactctgtctcanaaaaaaaaaaaaaaaaaccaagaaaaaga 543
|||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 128 gactacccag--aaaaaaaactctgtctcaaaaaaaaaaaaaaaaaaaacaagaaaaaga 71
Query: 544 aagaagaggaa 554
|||||||||||
Sbjct: 70 aagaagaggaa 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_b15.g1 MSMg01no340_b15.g1 CHROMAT_FILE:
MSMg01no340_b15.g1 PHD_FILE: MSMg01no340_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:04 2005
(568 letters)
>mm_chr6_106536183_106537150
Length = 968
Score = 1091 bits (564), Expect = 0.0
Identities = 567/568 (99%)
Strand = Plus / Plus
Query: 1 caaaatcttcccttactaattacaatgaccagaggaaattaatggctgtaaccagcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatcttcccttactaattacaatgaccagaggaaattaatggctgtaaccagcctga 260
Query: 61 gcaaactctcctagatggcatttacaggggaaccattttcaaatggcttttattaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaactctcctagatggcatttacaggggaaccattttcaaatggcttttattaggcac 320
Query: 121 agcactaatgatcctgtgtccaacagctcatgcaagaaggaatggccaaaataggaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcactaatgatcctgtgtccaacagctcatgcaagaaggaatggccaaaataggaagag 380
Query: 181 accagagagatattagaacccatgtgccctgctaataggaatgtaaaatggccctgctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagagagatattagaacccatgtgccctgctaataggaatgtaaaatggccctgctga 440
Query: 241 aaacgggaagggaatgctcagtcctcaaggtgattgcagatagaattaacaagccatcaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaggaagggaatgctcagtcctcaaggtgattgcagatagaattaacaagccatcaa 500
Query: 301 ttccacttcaaggcattactcaaagggactgaaagtaaagagtcacaggcagatgctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccacttcaaggcattactcaaagggactgaaagtaaagagtcacaggcagatgctctc 560
Query: 361 ccatcatgtccctaaacacatggctcacaatagacaggtgaatgcaagccgaacttctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatcatgtccctaaacacatggctcacaatagacaggtgaatgcaagccgaacttctta 620
Query: 421 gaagagacaaatttataaacaaaatgtatgggtatatttacagtggtatgtctttcacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagagacaaatttataaacaaaatgtatgggtatatttacagtggtatgtctttcacac 680
Query: 481 tgaaaaataaacagagagctaatacacggcgccacgtgaatgagcctggaaaacagcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaaataaacagagagctaatacacggcgccacgtgaatgagcctggaaaacagcaag 740
Query: 541 gggagtaaaacaggcagaaaagggcaga 568
||||||||||||||||||||||||||||
Sbjct: 741 gggagtaaaacaggcagaaaagggcaga 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
