Query= MSMg01no340_c16.b1 MSMg01no340_c16.b1 CHROMAT_FILE:
MSMg01no340_c16.b1 PHD_FILE: MSMg01no340_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:08 2005
(586 letters)
>mm_chr6_60607348_60608334
Length = 987
Score = 1067 bits (552), Expect = 0.0
Identities = 576/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 4 ggaattccccaggttgacaataaatatttaaagaattgctggtgtgtcagaaaaacaaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccccaggttgacaataaatatttaaagaattgctggtgtgtcagaaaaacaaaa 263
Query: 64 ctgcaccctgtgtccatgcaggatggtttatgaataaatctgcttcctacttcttgtgtt 123
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 ctgcaccctgtgtccgtgcaggatggtttatgaatacatctgcttcctacttcttgtgtt 323
Query: 124 tataaatacatctgcttcctacttctcctagtttatgaattcatctgctttgtacttctc 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tataaatacatctgcttcctatttctcctagtttatgaattcatctgctttgtacttctc 383
Query: 184 atctagttgtttttatacaatggagatgaagtacttgttttgccaagaactcacaggatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctagttgtttttatacaatggagatgaagtacttgttttgccaagaactcacaggatc 443
Query: 244 ttgtaccatctacccaagtgttatagtcataggaaaccaaaggggtcccaggaaggaaga 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 ttgtaccatctacccaagtgttatagtcataggaaaccaaagtggtcccaggaaggaaga 503
Query: 304 aagaggagtggagagacttagagcaattatatttctatacaaggaatgcaagttccttat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 aagaggagtggagagacttagagcaattatatttctatacaaggaatgcaagttcctcat 563
Query: 364 aggtgagaaacattacaatgtggagcactataactgattcatgcaaatattattcaaatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggtgagaaacattacaatgtggagcactataactgattcatgcaaatattattcaaatc 623
Query: 424 tatcctaagttctgagactataaaaattataatgatgatcataataatgtttatatgatg 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 tatcctaagttctgagactataaaaatgataatgatgatcataataatgtttatatgatg 683
Query: 484 -ttatatgtttctgatgatcataataatgtttatatcaataagtaagcaaatactatcat 542
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attatatgtttctgattatcataataatgtttatatcaataagtaagcaaatactatcat 743
Query: 543 ttttcctggcattttatcttacttttcaaattatttgaacggga 586
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttcctggcattttatcttacttttcaaattatttgaacggga 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_c16.g1 MSMg01no340_c16.g1 CHROMAT_FILE:
MSMg01no340_c16.g1 PHD_FILE: MSMg01no340_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:08 2005
(546 letters)
>mm_chr6_60768645_60769586
Length = 942
Score = 919 bits (475), Expect = 0.0
Identities = 528/549 (96%), Gaps = 10/549 (1%)
Strand = Plus / Minus
Query: 1 ttaaaaagttagaaataaaatttccagccatgccacttctgtgcaaccaccatagccacc 60
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 918 ttaaaaagtaagaaataaaatttccagccatgccacttctgtgcaaccaccagagccacc 859
Query: 61 atacaaaaatgatgtactgcataccatgcatatttgactattcaaccatagagtgttatg 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 atacaagaatgatgtactgcataccatgcatatttgactattcaaccatagagtgttatg 799
Query: 121 gaagcagcccagatactcaccagtggatgactggaagaagagactctggtataaatcaaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaagcaacccagatactcaccagtggatgactggaagaagagactctggtataaatcaaa 739
Query: 181 accagagtttttcaaatgaaccttaaatctccaaactatttaatcaaacggtggtcatta 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 accagagtttttcaaatgaaccttaaatctccaaactatttaatcaaatggtggtcatta 679
Query: 241 ta-tgaaattttaagcattaaaaagattattctttaaa-tgattaacaaacttactttta 298
|| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct: 678 tactgaaattttaagcattagaaagattatt-tttaaaatgattaacaaacttactttta 620
Query: 299 ataatatgtgcagtagctatttctttgtttagtaatggctcaatgcataggtgaaattct 358
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 619 ataatatgtgcaatagctatttctttgtttagtaatggctcaaggcataggtgaaattct 560
Query: 359 tatcttacatacagtcctagtttgaaagtgcccataacatgctgttacttaata-ttatg 417
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 559 tatcttacatacagtcctagtttgaaagt------aacatgctgttacttaataattatg 506
Query: 418 caaatcacttaattatgatttttagtttccttatgtatgaaatgggtattgaatggctgc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaatcacttaattatgatttttagtttccttatgtatgaaatgggtattgaatggctgc 446
Query: 478 atcagagataacgtgaggtcaatctgtaccaggggttgggcagacgctgacatcttcttt 537
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 atcagagatgatgtgaggtcaatctgtaccaggggttgggcagacgctgatatcttcttt 386
Query: 538 cctctccct 546
|||||||||
Sbjct: 385 cctctccct 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 942
Length adjustment: 10
Effective length of query: 536
Effective length of database: 932
Effective search space: 499552
Effective search space used: 499552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
