Query= MSMg01no340_g19.b1 MSMg01no340_g19.b1 CHROMAT_FILE:
MSMg01no340_g19.b1 PHD_FILE: MSMg01no340_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(578 letters)
>mm_chr6_80406406_80407383
Length = 978
Score = 1042 bits (539), Expect = 0.0
Identities = 571/594 (96%), Gaps = 20/594 (3%)
Strand = Plus / Plus
Query: 5 gaattcagctcctgataataacacagtgcaatagaatgggaacatggacatgtaacttga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctcctgataataacacagtgcaatagaatgggaacatggacatgtaacttga 264
Query: 65 aagtgatataaaaaagtccatgaagacaggatttagacatttattaacaaagttttaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgatataaaaaagtccatgaagacaggatttagacatttattaacaaagttttaatg 324
Query: 125 ggtcatttacagtgatcaactgtacagacatggtaaacttgtcacattatgaaaaattta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcatttacagtgatcaactgtacagacatggtaaacttgtcacattatgaaaaattta 384
Query: 185 tcaagatatatacaggaatctaagtttattctgagtttattaaaactattcgggttttgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaagatatatacaggaatctaagtttattctgagtttattaaaactattcgggttttgt 444
Query: 245 ggataattgctaaggtagccaaagccaggataaagaattctaaagagtgtccagtgcttt 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ggataattgctaaggtagccaaagccaggataaagagttctaaagagtgtccagtgcttt 504
Query: 305 gaactacacaatagtttccttgtggggtctgaatgagagtctaatgtattattcaagtcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaactacacaatagtttccttgtggggtctgaatgagagtctaatgtattattcaagtcc 564
Query: 365 aagatgtgatcttataagaatacttaaagactatcactgtcatgcattttatattatgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagatgtgatcttataagaatacttaaagactatcactgtcatgcattttatattatgta 624
Query: 425 tgtgtgtatgtacatatgtatacacacacacacacacacacacacacacacacacaca-- 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgtgtatgtacatatgtatacacacacacacacacacacacacacacacacacacaca 684
Query: 483 ----------tatatatataaaggnagagagagagagagagagagagagagagagagaga 532
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 cacacacatatatatatataaagggagagagagagagagagagagagagagagagagaga 744
Query: 533 gagagagagagagagagcgaga--------aagcttctttgtggtatctgtttt 578
||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 745 gagagagagagagagagagagagagagagaaagcttctttgtggtatctgtttt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g19.g1 MSMg01no340_g19.g1 CHROMAT_FILE:
MSMg01no340_g19.g1 PHD_FILE: MSMg01no340_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:26 2005
(555 letters)
>mm_chr6_80542392_80543346
Length = 955
Score = 779 bits (403), Expect = 0.0
Identities = 479/543 (88%), Gaps = 61/543 (11%)
Strand = Plus / Minus
Query: 69 ctgagagattgtcaaaatcatcttccttatataatcacattggagttgtacaataaagtg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 ctgagagattgtcaaaatcatcttccttatataatcacattggagttgtacaataaagtg 896
Query: 129 aagcaatgatgaaatacttatatcaataaaaagattttacctataatgttttaaaattaa 188
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 895 aagcaatgatgaaatacttatatcaataaaaatattttacctataatgttttaaaattaa 836
Query: 189 tgaacatttgctgtaaaataaaactg---------------------------------- 214
|||||||||| |||||||||||||||
Sbjct: 835 tgaacatttgttgtaaaataaaactgatacttggaataacaataaattcacatttttcta 776
Query: 215 -----------------------acataatttatgtataatatatattcatataactcat 251
|||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctgaatttgtttaaattatttatacataatttatgtataatatatattcatataactcat 716
Query: 252 ttaattcatatacataatgcatgtataactcaaataatatatcttactctatgcactatt 311
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 715 ttaattcatatacataatgcatgtataactcaaataatgtatcttactctatgcactatt 656
Query: 312 gaacgttttgagttttgtatgagacaaagattagaaaagtaatggctcctgc--actctg 369
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 655 gaacgttttgagttttgtatgagacaaagattagaaaagtaatggctcc--ccgactctg 598
Query: 370 cacttccccttctctaggtctagaatttctctccttcctttgtaactaattttctcggaa 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cacttccccttctctaggtctagaatttctctccttcctttgtaactaattttctcggaa 538
Query: 430 actttcctgtttcttatcttctattcacttcacattaggatcttttcctgtcaaatttct 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 actttcctgtttcttatcttctattcacttcacattaggatcttttcctgtcaaatttct 478
Query: 490 gtataagagagcagtatcatatctttaatgatatttccacaatctaatttcagcgtgatt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtataagagagcagtatcatatctttaatgatatttccacaatctaatttcagcgtgatt 418
Query: 550 ttt 552
|||
Sbjct: 417 ttt 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
