BAC Information

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BAC

Clone NameMSMg01-341P04
Chromosome6 (Build37)
Map Location 41,639,387 - 41,778,682
singlet/doubletdoublet
Overlap geneKel, Olfr459
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik
Downstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341P04.T7 (MSMg01no341_p04.b1)MSMg01-341P04.TJ (MSMg01no341_p04.g1)
ACCAG455618AG455619
length747759
length of high quality
(start - end)
456 (45 - 500)295 (75 - 369)
definitionCHROMAT_FILE: MSMg01no341_p04.b1 PHD_FILE: MSMg01no341_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:19 2005CHROMAT_FILE: MSMg01no341_p04.g1 PHD_FILE: MSMg01no341_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,639,387 - 41,639,838)(41,778,388 - 41,778,682)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCATAAATCCTCATGAGCTATTAATACTGTCACCCAGATATGTG
ATCTTTACCCCCTTCTCTTTCTTCTATCCCCATTTCTTCACCCGGTAATC
AACTATCTCTTAAATGGCTTCAAGTTGGCGTGTAATCATGCTGGCATTAC
CTTGTTCAAGGCCTCTTTCTGGGTCTCCTCACTTATCCAGGAAAGCTTTT
TGAGGCGTATGATGACAGCATCCTTTATCTCAGCAAATAATTCCATGGCC
TATGGAATGTGGTCAGGAAAAGGAAAAAAAGGGTAAGAATTAGTCTGTCC
CTGGTCCTTCAGTATTCTGTAAAGAGACCTTGACCCTACTGGACTCCAAA
GCTGTCAGAGAAAGGGGAAGGGTTCACAAGAAGGTTTGTTCCCCAGATTA
CCACAAATATCCAAAGTACAATGATTTGTGCGGTTACTAGGACAGTGTCA
GTCTCAGAGAAGGTAATTAGTTGCTCCAAGAAGCGACCACACCAGTGCTT
TGGCCATTGTGATGCCAGAGATTGATGGGTGCTCTCATTTGGGTCCAGCA
ACTCTCCCAGAAAAGCATAAAGCAGGGGGAACTACTGTTTCCGGCCCCGT
TTTTCAGACTTTTGTCTCCATACCCTCCCCCTTAAGACATAACTTTTCTT
TTTCTAAGTCCTTAACTTTCCCCGCCGTTGTTGCCTCTTCCAACGAA
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTACTGCAGGACTGTGTCTTTGGAG
ATCACAAACTTGCAATAAGACATTGAGCTACTGATTACTGAGAGAAAGGT
AGCATTGGGAAGGGTGGATAGAGCAGAAAGGATATGATATGCTTGGGGAA
ATGGTGAAGGGTGTGACCAAGGCTGATTTAAACAGAGGAAAAATGTTAGT
AAGACCAATATGGCTAAAATAAAGACATAACATAAATAAAATAAAGACTG
TCTGAATGACAGTCCTGAGAGAAATATATTGGATATGTAAATTGCTGTTA
TCCAGTGAAAGTATAATTTGGACTGAAATGACTCAATGCACAAAAGACTG
CTAACATGTGTCATTAACCCCTCCATCTGGACTCAGCGACAATTTCCTGC
TGAAAATTCATGGTAAATCGTGGTGCTTGATTCTTATATCCTGTTCCATA
CCCGTTGTTTCCCCCTTCGACCTCCCTATTTTGTCTTCCCCCCGCCCTTT
CTTTCTCACCTCCTTGCATTCCTTTTTCGGTCTCCCCTTTGCCTTTTTTT
TTTCCCCTCTTCTTTCCTTCCCATCCCTTCTCCCGTTTTATCTTCCCCTT
TTTTCCTCCTCCTTCCGCCTTCCCCCTTTCCCCTTCCTCTCTTGTCACCC
TCTCCCTCCTCATCTTTTTATTGCCCTTCCTCCCCCACGGCCCCTCCTCC
TCCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_p04.b1 MSMg01no341_p04.b1 CHROMAT_FILE:
MSMg01no341_p04.b1 PHD_FILE: MSMg01no341_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:19 2005
         (456 letters)



>mm_chr6_41639183_41640038
          Length = 856

 Score =  828 bits (428), Expect = 0.0
 Identities = 446/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctcataaatcctcatgagctattaatactgtcacccagatatgtgatctttac 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattccctcataaatcctcatgagctattaatactgtcactcagatatgtgatctttac 264

                                                                       
Query: 65  ccccttctctttcttctatccccatttcttcacccggtaatcaactatctcttaaatggc 124
           | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 265 caccttctctttcttctatccccatttcttcacccagtaatcaactacctcttaaatggc 324

                                                                       
Query: 125 ttcaagttggcgtgtaatcatgctggcattaccttgttcaaggcctctttctgggtctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaagttggcgtgtaatcatgctggcattaccttgttcaaggcctctttctgggtctcc 384

                                                                       
Query: 185 tcacttatccaggaaagctttttgaggcgtatgatgacagcatcctttatctcagcaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacttatccaggaaagctttttgaggcgtatgatgacagcatcctttatctcagcaaat 444

                                                                       
Query: 245 aattccatggcctatggaatgtggtcaggaaaaggaaaaaaagggtaagaattagtctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattccatggcctatggaatgtggtcaggaaaaggaaaaaaagggtaagaattagtctgt 504

                                                                       
Query: 305 ccctggtccttcagtattctgtaaagagaccttgaccctactggactccaaagctgtcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctggtccttcagtattctgtaaagagaccttgaccctactggactccaaagctgtcag 564

                                                                       
Query: 365 agaaaggggaagggttcacaagaaggtttgttccccagattaccacaaatatccaaagta 424
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 agaaaggggaagggctcacaagaaggtttcttccccagattaccacaaatatccaaagta 624

                                           
Query: 425 caatgatttgtgcggttactaggacagtgtca 456
           ||||||||||||||||||||||||||||||||
Sbjct: 625 caatgatttgtgcggttactaggacagtgtca 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no341_p04.g1 MSMg01no341_p04.g1 CHROMAT_FILE:
MSMg01no341_p04.g1 PHD_FILE: MSMg01no341_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:20 2005
         (295 letters)



>mm_chr6_41778188_41778882
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actactgcaggactgtgtctttggagatcacaaacttgcaataagacattgagctactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actactgcaggactgtgtctttggagatcacaaacttgcaataagacattgagctactga 436

                                                                       
Query: 61  ttactgagagaaaggtagcattgggaagggtggatagagcagaaaggatatgatatgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttactgagagaaaggtagcattgggaagggtggatagagcagaaaggatatgatatgctt 376

                                                                       
Query: 121 ggggaaatggtgaagggtgtgaccaaggctgatttaaacagaggaaaaatgttagtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggggaaatggtgaagggtgtgaccaaggctgatttaaacagaggaaaaatgttagtaaga 316

                                                                       
Query: 181 ccaatatggctaaaataaagacataacataaataaaataaagactgtctgaatgacagtc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 315 ccaatatggctaaaataaagacataaaataaataaaataaagactgtctgaatgacagtc 256

                                                                  
Query: 241 ctgagagaaatatattggatatgtaaattgctgttatccagtgaaagtataattt 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgagagaaatatattggatatgtaaattgctgttatccagtgaaagtataattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)