BAC Information

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BAC

Clone NameMSMg01-342E07
Chromosome6 (Build37)
Map Location 117,440,545 - 117,581,848
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342E07.T7 (MSMg01no342_e07.b1)MSMg01-342E07.TJ (MSMg01no342_e07.g1)
ACCAG455861AG455862
length756730
length of high quality
(start - end)		244 (58 - 301)459 (64 - 522)
definitionCHROMAT_FILE: MSMg01no342_e07.b1 PHD_FILE: MSMg01no342_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:44 2005CHROMAT_FILE: MSMg01no342_e07.g1 PHD_FILE: MSMg01no342_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,440,545 - 117,440,788)(117,581,390 - 117,581,848)
sequence
GGCGCTATACGACTCACTATTTCAAGAGGATCCGCGGAATTCACATGCTG
CTATGCAGGGACTTCTGGGCTGAAGTGATTCTTTGGAGTTGACTGGCATT
GTGCCAGGGCTTTTATACCACATTTCAACCTGTCACTGGGTCAAGGTCAC
TTTGGGACAGATGCAGTATCTTAAAGGAGGGAGCAGGTCAGACAAGAACA
ACCAGTTTATGAAGAATCCAAGCACAGTAGTTCTTCCGTGGCCCTGAAGA
CCACATCCAAAATCTACACACTCTTGGCTGATAAACATGCTTTCCTCACA
CTTTTTTTTAGACTTTATAAGTGGTTATCCTGGGCTGCATCAGTGAGGCT
GGCAGTGGCCCCCTGAGTGAAAGAGGATGCTGGGGAAGGGCAGAAAGAGA
TCTGAAGGTCATACACCTGATGGCCCCCAGAATTAGAAGAAGGGTCATGC
ATCAAGGATGCTTGGATTCTCAGGAATTGCATATGACGATAACATGTCCC
CCTGAATATTCCCAATGAAGCAACCCCCCTTCCTTTGCCTTGACTTTTTT
TCTATTGTTGTCTGTTTTTGTTCCCCCTGACCCCCTTATTTGTTTTTCCC
ATTTGTTGTCCCCCCCTATTACATCTGGTTTTCATATAATCTACTCCCAC
TCCACTTTCTCTCCTGTTTTCTACCACCATTTTCTAAATTCAACCCCTTA
CTTATTTTCTCTCCTCCTCCCCTTGTCTCTTTTATTATTCCTTCTCCTCT
ACCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCATGTGTCTACAGGTAAGAAGACAGAAGCGGTCC
TCTGCTACGTAAGTTTCTGGCCTGGAGATGAGTCTCTAGAAACAACTTCT
ATTTTAATAATGGGCACAGTTCAGGGCATGATGTCGAGGCAGAGAGAGCA
GCCCAGGTGCTGTGCGTGACCTGCAGAAGAACATTGGTAGGCAATGTGCT
CAGAGACGGAGTCAGAGAACATGGCTTATCCCAGGCCGAGGAAGAACGAT
GAAGGCACAGTGGGTATGTCAGGTCAAGGAGAATGCCTAAGTGAGGGACT
CTGCAGGAGACACAGGGCAGAATGACCATGCAGGGGGTCACAATGACAGA
GGACACATCAATCAGTCTTCATTTATCTCCCTAAACAGTGAGGCTGGGGC
CTAGCCTAATAGGGTGACTGAGGAAGGGACTAACTCTCCAGTGCAGTGTG
TCTGAGCATCCTTTTGAGTTGGCTCCTGGGGTGTTGAACAGGCGTGCAGA
ATGTCCTGGCCACGTGGTGCCAAAACTCATTCTTAACTTTTTCCTGCTCA
GTATCTTTTCTCTCCTTCTCCCCGCCCTCGGGGCAAAAATTATTCGCCTT
TCCAATCCCCCACTATTTTTCTCCTTTCTTTTTGCTTGGTTACTGTTTTT
TCTCTGGCCCCCCTGTTTTTTTCTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_e07.b1 MSMg01no342_e07.b1 CHROMAT_FILE:
MSMg01no342_e07.b1 PHD_FILE: MSMg01no342_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:44 2005
         (244 letters)



>mm_chr6_117440345_117440988
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggacttctgggctgaagtgattctttggagttgactggcattgtgccagggcttttata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 gggacttctgggctgaagtgattctttggagttgactggcattgtgccagagcttttata 260

                                                                       
Query: 61  ccacatttcaacctgtcactgggtcaaggtcactttgggacagatgcagtatcttaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacatttcaacctgtcactgggtcaaggtcactttgggacagatgcagtatcttaaagg 320

                                                                       
Query: 121 agggagcaggtcagacaagaacaaccagtttatgaagaatccaagcacagtagttcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggagcaggtcagacaagaacaaccagtttatgaagaatccaagcacagtagttcttcc 380

                                                                       
Query: 181 gtggccctgaagaccacatccaaaatctacacactcttggctgataaacatgctttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggccctgaagaccacatccaaaatctacacactcttggctgataaacatgctttcctc 440

               
Query: 241 acac 244
           ||||
Sbjct: 441 acac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no342_e07.g1 MSMg01no342_e07.g1 CHROMAT_FILE:
MSMg01no342_e07.g1 PHD_FILE: MSMg01no342_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:45 2005
         (459 letters)



>mm_chr6_117581190_117582048
          Length = 859

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatgtgtctacaggtaagaagacagaagcggtcctctgctacgtaagtttctggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tcccatgtgtctacaggtaagaagacagaagcggtcctctgctacgtaagtttctggcct 600

                                                                       
Query: 61  ggagatgagtctctagaaacaacttctattttaataatgggcacagttcagggcatgatg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 599 ggagatgagtctctagaaacaacttctattttaataatgagcacagttcagggcatgatg 540

                                                                       
Query: 121 tcgaggcagagagagcagcccaggtgctgtgcgtgacctgcagaagaacattggtaggca 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tggaggcagagagagcagcccaggtgctgtgcgtgacctgcagaagaacattggtaggca 480

                                                                       
Query: 181 atgtgctcagagacggagtcagagaacatggcttatcccaggccgaggaagaacgatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atgtgctcagagacggagtcagagaacatggcttatcccaggccgaggaagaacgatgaa 420

                                                                       
Query: 241 ggcacagtgggtatgtcaggtcaaggagaatgcctaagtgagggactctgcaggagacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggcacagtgggtatgtcaggtcaaggagaatgcctaagtgagggactctgcaggagacac 360

                                                                       
Query: 301 agggcagaatgaccatgcagggggtcacaatgacagaggacacatcaatcagtcttcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agggcagaatgaccatgcagggggtcacaatgacagaggacacatcaatcagtcttcatt 300

                                                                       
Query: 361 tatctccctaaacagtgaggctggggcctagcctaatagggtgactgaggaagggactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tatctccctaaacagtgaggctggggcctagcctaatagggtgactgaggaagggactaa 240

                                                  
Query: 421 ctctccagtgcagtgtgtctgagcatccttttgagttgg 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctctccagtgcagtgtgtctgagcatccttttgagttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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