Query= MSMg01no342_j06.b1 MSMg01no342_j06.b1 CHROMAT_FILE:
MSMg01no342_j06.b1 PHD_FILE: MSMg01no342_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:08 2005
(448 letters)
>mm_chr6_101020571_101021419
Length = 849
Score = 826 bits (427), Expect = 0.0
Identities = 439/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 7 gaattctttccttcc-agcagctgagtaggctctttgagatgaaaactcccctgtgtgca 65
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttcctacccagcagctgagtaggctctttgagatgaaaactcccctgtgtgca 266
Query: 66 gaaagagagtgcacatagggtacttgctgccttgctgctgttagaaggtctgcctcttgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaaagagagtgcacatagggtacttgctgccttgctgctgttagaaggtctgcctcttgg 326
Query: 126 tcatggtgcagttaacctgtcaggcagtgggtacgttcaccactaatcacagtagtgagc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcatggtgcagttaacctgtcaggcagtgggtacgttcaccactaatcacagtagtgagc 386
Query: 186 aagccttttcattttccagtgcacgtgggcatgcaggtgtatgtgcacacatgttcatga 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagccttttcattttccagtgcacgtgggcatgcaggtgtatgtgcacacatgttcatga 446
Query: 246 gcatttaaacccacacaggcatgcctctatgtatgccaggagacaaccctgggaatcttc 305
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 447 gcatttaaacccacacaggcatgcctctatggaggccaggagacaaccctgggaatcttc 506
Query: 306 ttcaggaatgccctccacctcgtttgagacacggtctttgattggcttggagcttaccga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttcaggaatgccctccacctcgtttgagacacggtctttgattggcttggagcttaccga 566
Query: 366 ttaggctatgttgactggccatcaagtcctcctggaatgtaccaccatggtttttgcatg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttaggctatgttgactggccatcaagtcctcctggaatgtaccaccatggtttttgcatg 626
Query: 426 aattttggaaactaagctcaggt 448
|||||||||||||||||||||||
Sbjct: 627 aattttggaaactaagctcaggt 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 849
Length adjustment: 10
Effective length of query: 438
Effective length of database: 839
Effective search space: 367482
Effective search space used: 367482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_j06.g1 MSMg01no342_j06.g1 CHROMAT_FILE:
MSMg01no342_j06.g1 PHD_FILE: MSMg01no342_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:08 2005
(449 letters)
>mm_chr6_101229806_101230654
Length = 849
Score = 801 bits (414), Expect = 0.0
Identities = 441/450 (98%), Gaps = 2/450 (0%)
Strand = Plus / Minus
Query: 1 atagttaacacttgggtcccaaagtagcatgcttcaagttatatcattaactataaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atagttaacacttgggtcccaaagtagcatgcttcaagttatatcattaactataaaagc 503
Query: 61 tgtggccttacagaagtaattcatctcagatgcaaattccaaagagcctatcttccttag 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 tgtggccttacagaagtaattcatctccgatgcaaattccaaagagcctatcttccttag 443
Query: 121 atgggtatcaccctccacagacagtgacagcgttctgagatgacagtcagtacatttcta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtgggtatcaccctccacagacagtgacagcgttctgagatgacagtcagtacatttcta 383
Query: 181 caatacagatacttgctcgatgccggataccacattaagaggtaaagtttccgagtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caatacagatacttgctcgatgccggataccacattaagaggtaaagtttccgagtaaag 323
Query: 241 caccaggcatttggtttgagatactgtgttgtgcctctgtgctgactgtgtgggggagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caccaggcatttggtttgagatactgtgttgtgcctctgtgctgactgtgtgggggagta 263
Query: 301 cggtatggacatgacgcagccacagatttctgttcccctagttttaactaaggaagggct 360
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 262 cggtatggacatgacgcagccacaaatttctgttcccctagtttttactaaggaagggct 203
Query: 361 aatatcaccaccaccactaccaccaccatcaccaagtaactctatcctgagaagggaaaa 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aacatcaccaccaccactaccaccaccatcaccaagtaactctatcctgagaagggaaaa 143
Query: 421 atctgtccactc-agtttctagactaaatg 449
||||||||| || |||| | ||||||||||
Sbjct: 142 atctgtcca-tccagttgcaagactaaatg 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
