Query= MSMg01no343_b04.b1 MSMg01no343_b04.b1 CHROMAT_FILE:
MSMg01no343_b04.b1 PHD_FILE: MSMg01no343_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:46 2005
(367 letters)
>mm_chr6_63051119_63051887
Length = 769
Score = 669 bits (346), Expect = 0.0
Identities = 361/366 (98%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtcgatctatcaagagtaacattaaagaaagctgacttttcc-tctgacatc 62
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcagtcgatctatcaagagtaacattaaagaaagctgacttttccctctgacatc 263
Query: 63 atctattaagtggcagaagaaaacctaagacaaacttggaacagaaaaacaattaagatt 122
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 atctattaagtgtcagaagaaaacctaagacagacttggaacagaaaaacaattaagatt 323
Query: 123 gtttttttt-ccacttctctttatctctccctttccaattttgactggtttaaaagttaa 181
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtttttttttccacttctctttatctctccctttccaattttgactggtttaaaagttaa 383
Query: 182 agaacgaatttttataaattctaaccaaagagaacacatggaaggactcatggctccagc 241
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 384 agaacgaatttttataaattctaaccaaagagaacacatggaaggacccatggctccagc 443
Query: 242 tgtatatgtaacaaagaatggccttatctggcatcaatgggaggtgagggccttgttcct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtatatgtaacaaagaatggccttatctggcatcaatgggaggtgagggccttgttcct 503
Query: 302 gtaaaggcttgctggcccagcatagggggatgctagggtggtgaagcagaagtggatggg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaaggcttgctggcccagcatagggggatgctagggtggtgaagcagaagtggatggg 563
Query: 362 aaggtg 367
||||||
Sbjct: 564 aaggtg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 769
Length adjustment: 9
Effective length of query: 358
Effective length of database: 760
Effective search space: 272080
Effective search space used: 272080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_b04.g1 MSMg01no343_b04.g1 CHROMAT_FILE:
MSMg01no343_b04.g1 PHD_FILE: MSMg01no343_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:46 2005
(317 letters)
>mm_chr6_63200235_63200951
Length = 717
Score = 613 bits (317), Expect = e-180
Identities = 317/317 (100%)
Strand = Plus / Minus
Query: 1 ttggctctgttaggagattcatttgcttgtttatttccatcttgtcttatttgaacagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttggctctgttaggagattcatttgcttgtttatttccatcttgtcttatttgaacagtt 458
Query: 61 aggaattaaatatcaaaaggtcccttattagccatataccaatcctatgttaaaaggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aggaattaaatatcaaaaggtcccttattagccatataccaatcctatgttaaaaggaaa 398
Query: 121 ttagaacatgaggacgtttttaaattaaaatatgtactataaagtgaaaaacttcaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttagaacatgaggacgtttttaaattaaaatatgtactataaagtgaaaaacttcaaaaa 338
Query: 181 caacgctgttttaactattctatttgctttaaggaagaagatatgttacatatgttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caacgctgttttaactattctatttgctttaaggaagaagatatgttacatatgttaaaa 278
Query: 241 taagaagctttactctgtcatggaagggaaagaatttttctattatatgacagattactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taagaagctttactctgtcatggaagggaaagaatttttctattatatgacagattactg 218
Query: 301 ttgtttggcatattagt 317
|||||||||||||||||
Sbjct: 217 ttgtttggcatattagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
