Query= MSMg01no343_m10.b1 MSMg01no343_m10.b1 CHROMAT_FILE:
MSMg01no343_m10.b1 PHD_FILE: MSMg01no343_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:44 2005
(348 letters)
>mm_chr6_53025888_53026630
Length = 743
Score = 572 bits (296), Expect = e-168
Identities = 317/326 (97%), Gaps = 5/326 (1%)
Strand = Plus / Minus
Query: 23 ttactggaatctgatttgttttctggaacataaaagtagttcccacatacataagttgac 82
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 543 ttactggaatctgatttgttttctggaacataaaagtagttccc----acataagttgac 488
Query: 83 catggaaataagggatcaagttgcagggcccttcaagatggaattcagtaagattgcttg 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catggaaataagggatcaagttgcagggcccttcaagatggaattcagtaagattgcttg 428
Query: 143 ttctgtgactccgagagctaaaactgaaacagaatatatatgaatatggcaaacaattga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttctgtgactccgagagctaaaactgaaacagaatatatatgaatatggcaaacaattga 368
Query: 203 ctaaaaaccaaatacaatacaattataggttaggagatcaagacaaaagcaaaagggtct 262
||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 367 ctaaaaaccaaat-tattacaattataggataggagatcaagacaaaagcaaaagggtct 309
Query: 263 cctttctcagtgatgtgcaacacctgtttcccaccacatcccaaactataacaggaaggt 322
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cctttctcagtgatgggcaacacctgtttcccaccacatcccaaactataacaggaaggt 249
Query: 323 accgagtgaaggttggatcaagcagg 348
||||||||||||||||||||||||||
Sbjct: 248 accgagtgaaggttggatcaagcagg 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 743
Length adjustment: 9
Effective length of query: 339
Effective length of database: 734
Effective search space: 248826
Effective search space used: 248826
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no343_m10.g1 MSMg01no343_m10.g1 CHROMAT_FILE:
MSMg01no343_m10.g1 PHD_FILE: MSMg01no343_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:44 2005
(287 letters)
>mm_chr6_52858409_52859095
Length = 687
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 1 tttggaatggtttggaagagatagcacatgagatatcaggatccaaacaaaatgtgaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggaatggtttggaagagatagcacatgagatatcaggatccaaacaaaatgtgaagg 260
Query: 61 gtctgtatcatgtttgagtaaaatgggcattatcaaaacaagctcaggacctcaggctcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gtctgtatcatgtttgagtaaaatgggcattatcaaaacaagctcaggacctcaggttcc 320
Query: 121 tcagtggggctctagggactttgggtttggtaagctttattatcagtagagttcagaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtggggctctagggactttgggtttggtaagctttattatcagtagagttcagaagt 380
Query: 181 ggaaggcagaggtgttaatgaattttctaggctttcttaaggcaaggtttaatagtctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggcagaggtgttaatgaattttctaggctttcttaaggcaaggtttaatagtctag 440
Query: 241 atatggccacaatatcataagacattgaatcatcttgggggtgggtt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatggccacaatatcataagacattgaatcatcttgggggtgggtt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
