Query= MSMg01no344_e22.b1 MSMg01no344_e22.b1 CHROMAT_FILE:
MSMg01no344_e22.b1 PHD_FILE: MSMg01no344_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:26 2005
(434 letters)
>mm_chr6_54189112_54189945
Length = 834
Score = 638 bits (330), Expect = 0.0
Identities = 413/468 (88%), Gaps = 42/468 (8%)
Strand = Plus / Minus
Query: 5 gaattcctacagtccaggcccctgaagtactaatattcagttagaatgtaaagcacattg 64
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 493 gaattcctacagcccaggcccctgaagtactaacattcagttagaatgcaaagcacattg 434
Query: 65 aatgcgtaggcacaggcgcaaagcttccagtacaatgctagtggtgcgagctccctcatg 124
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 aatgcataggcacgggcgcaaagcttccagtacaatgctagttgtgcgagctccctcatg 374
Query: 125 tacggcaggaaagcggcacacagtggcaggtgtaaacttccaaacgcacactgtacaaac 184
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 tacggcaggaaagcggggcacagtggcaggtgtaaacttccaaacgcacattgtacaaac 314
Query: 185 acctaaaattaatctagccataatgaattttaaaattacagttgtgccttacaattctaa 244
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 313 acctaaaattaatctagccataatgaatttaaaaattacagttgtgcctttcaattctaa 254
Query: 245 gtgtaagacagcatccccttaagtgctgctccaaaagtctgagggacaaaaaaccaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtgtaagacagcatccccttaagtgctgctccaaaagtctgagggacaaaaaaccaaaac 194
Query: 305 caaaaccaaaaccaaaaccaaaac------------------------------------ 328
||||||||||||||||||||||||
Sbjct: 193 caaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaacaaaaacaaaac 134
Query: 329 ------caaacacctaaacactcacacacccttgaattctgaatctctgtgtgcacaaac 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 caaaaacaaacacctaaacactcacacacccttgaattctgaatctctgtgtgcacaaac 74
Query: 383 gtgtgcgtgtgagtgtacgtgtatgtgggtttgtatgtgtatatgtgt 430
|||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 73 gtgtgcgtgtgagtgtacatgtaggtgggtttgtatgtgtatatgtgt 26
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no344_e22.g1 MSMg01no344_e22.g1 CHROMAT_FILE:
MSMg01no344_e22.g1 PHD_FILE: MSMg01no344_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:27 2005
(487 letters)
>mm_chr6_54011455_54012341
Length = 887
Score = 942 bits (487), Expect = 0.0
Identities = 487/487 (100%)
Strand = Plus / Plus
Query: 1 tttagatccgttatgaaatcacattcagttgtttgtttgctatctcttcatttatctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagatccgttatgaaatcacattcagttgtttgtttgctatctcttcatttatctctg 260
Query: 61 gcaacgttttctccgaatccccgtctgtgcttagagtgtgctttggctcccttcttcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaacgttttctccgaatccccgtctgtgcttagagtgtgctttggctcccttcttcccc 320
Query: 121 agcagtgaacttctcggtgagcaaggattaagtgtgttggtttaggataggcggtgcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagtgaacttctcggtgagcaaggattaagtgtgttggtttaggataggcggtgcttc 380
Query: 181 acatttcagagattgttaatataggctagcacccactaagactggcttatggatcaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatttcagagattgttaatataggctagcacccactaagactggcttatggatcaggtt 440
Query: 241 cccttctataaaggaaaattaatacccttaaaaattacaaacgatcaagaactggttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttctataaaggaaaattaatacccttaaaaattacaaacgatcaagaactggttaaa 500
Query: 301 ctggagagaaaggaaatcactgtgttctgtagagctggttttactcatgagactaataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggagagaaaggaaatcactgtgttctgtagagctggttttactcatgagactaataca 560
Query: 361 ttctgctgcctgggttgtgatagacagagtcccaagccattcagtatcaggttgtgtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgctgcctgggttgtgatagacagagtcccaagccattcagtatcaggttgtgtgtg 620
Query: 421 aagcctcaagtcttagttacatagtaatgaagctgagttcaaattctgcgggagcacggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcctcaagtcttagttacatagtaatgaagctgagttcaaattctgcgggagcacggc 680
Query: 481 tctgatg 487
|||||||
Sbjct: 681 tctgatg 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
