Query= MSMg01no344_j10.b1 MSMg01no344_j10.b1 CHROMAT_FILE:
MSMg01no344_j10.b1 PHD_FILE: MSMg01no344_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:49 2005
(248 letters)
>mm_chr6_5221275_5221922
Length = 648
Score = 294 bits (152), Expect = 3e-84
Identities = 211/246 (85%), Gaps = 30/246 (12%)
Strand = Plus / Plus
Query: 1 gaaacatttttgtgcctagactggaaagatgcccactgggtttgtatctgtttttggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacatttttgtgcctagactggaaagatgcccactgggtttgtatctgtttttggttt 260
Query: 61 tggcttcttcccaacctccctctaaccagtgtgccccacttccgaatcctggctatgaca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcttcttcccagcctccctctaaccagtgtgccccacttccgaatcctggctatgaca 320
Query: 121 ctcccccccacccccccacctccccccaccccatccccgccacacacacacacacacaca 180
| |||||| ||| ||| | |||| ||| ||||||||||||
Sbjct: 321 c-----cccacc-----acc-------acc--a------ccac-cacccacacacacaca 354
Query: 181 catacccagtctattgggctttgatgacccaaccatgtttctatagtgatttaatttata 240
| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 c----ccagcctattgggctttgatgacccaaccatgtttctatattgatttaatttata 410
Query: 241 gcacaa 246
| ||||
Sbjct: 411 gaacaa 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no344_j10.g1 MSMg01no344_j10.g1 CHROMAT_FILE:
MSMg01no344_j10.g1 PHD_FILE: MSMg01no344_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:49 2005
(511 letters)
>mm_chr6_5402165_5403075
Length = 911
Score = 652 bits (337), Expect = 0.0
Identities = 345/349 (98%), Gaps = 3/349 (0%)
Strand = Plus / Minus
Query: 1 actggcagttcatagtcatctctaaagtcagctcttcagcagagaggaagagatccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 actggcagttcatagtcatctctaaagtcagctcttcagcagagaggaagagatccaaag 291
Query: 61 tctctggcctccatgtgtgcctgcactcaaatgcacatatccacactcagacacatgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctctggcctccatgtgtgcctgcactcaaatgcacatatccacactcagacacatgctg 231
Query: 121 ccagtcacatgactaaaaccaatgaaagcaaaggtgaagacagcgaatgttcgaagaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ccagtcacatgactaaaaccaatgaaagcaaaggtgaagacagcgaatgttcgaagaaga 171
Query: 181 tacttggtgttgacctctgacctcagtatgcataaacacattc---ttttttagctattt 237
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 170 tacctggtgttgacctctgacctcagtatgcataaacacattctttttttttagctattt 111
Query: 238 tctttatttacatttcaaatgttaccccctttccttgtttcccctctgaaaatcccctat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tctttatttacatttcaaatgttaccccctttccttgtttcccctctgaaaatcccctat 51
Query: 298 cccctccccactccctcctgctccccaacccacccactcccattcctgg 346
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 cccctccccactccctcctgctccccaacccacccactcccattcctgg 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
