BAC Information

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BAC

Clone NameMSMg01-344K22
Chromosome6 (Build37)
Map Location 128,834,776 - 128,835,317
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d, LOC667706
Downstream geneClec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344K22.T7 (MSMg01no344_k22.b1)MSMg01-344K22.TJ (MSMg01no344_k22.g1)
ACCAG457690AG457691
length764746
length of high quality
(start - end)		519 (42 - 560)570 (71 - 640)
definitionCHROMAT_FILE: MSMg01no344_k22.b1 PHD_FILE: MSMg01no344_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:56 2005CHROMAT_FILE: MSMg01no344_k22.g1 PHD_FILE: MSMg01no344_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTATTTTTGTCACTGATTTTATCATAACGTGATTCTTCTATCTTCAAA
CCATTCACATGTCTGTTTTTAATCTCCTGAGTTAGAGATAGGAATTTGCC
CACTATTGTAAGAGCCAATGAGTGACCATCCACTGGGCACCACATGCACT
TCCTTGTCCGTGATCCGCTTCGTGGAATGGGTTTCAGGAACTGTTAAAGA
CTCACTCATGGTGACTCTGCTGATGATAGCGGCAGGAAACCCAGGGTGTG
AGCACATCGCCTTATTTAAATAGTCCTCATTGCACACGCACATTATGAGA
CCTGCAAAAATATAATTAAACCGTTTTTGAGTGGTAACATAAGGAACTCC
ATTGGCTGCTCAGTAAAACAACTTTAGCAAAGGTGAAATTTCTAAAAGTG
TGAGTCTGGAAACTATGAGATCATATAGCAAACAAAAACATTTTAAAAAA
AATATAGGCCATGTGCTTAGCATGAACAGAAATAATCTGATGCCCAGAAA
TAAATAAGCCTTGGTAAGAAAAGAGTATAGCATCAACTACTGAGATGGCT
CAATGGAGAAAGGCACTTACCACAAAACTTGGGGACTGGGCCCACTGGTG
GAAGGAAAAAAACGATTCTTGCAAAATGCCGTTTAACTTACCCCATACGG
GGAATACCAATGAGGTTAAACTACGGGGGTCTTTGGGGTTTGAAAAAAAT
CTTAAAACAAACAN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCCAAAGGAGGGAGGCAGCCAACAGTCCT
ACACAGTGATGATGCCTATAATCCATATCAATGGGCAGCATGGCATGAAA
ACCCTAGGGTGCAGTAGTGGCACACATAGCTTGGTGGTAACCATCAACTC
TCTAATTGGATTTAAGACCCACTCAGCAAGATGGAAACCATGCCTAGGAC
TGGAAACCTAGCTAATTATTCAGTGCTAATGAAGTCATGGCTATTGGAGC
AGAATCTACAATCACTAATTTACTAAATCAGTATAATCCCCGACGATCTA
TAAACATCTGTCCTCATACCCACACTTCACCGGTGCCTCATCAAGATTTC
TCTTTACAACAGATGGATACCATTACAGCACAAGTGATAGAAATGCAGAA
CTGTGCCAAAAGATACATCTACAAACATTCCCATACCAAAGACTCAGGGA
ACATTGCAAAAGAAGGGGCAAAACAGTTGTAAGAGTCAGAGGCTCAGGTG
TGAGACTGTGTCACCTAGTAACATCAGAAGCTAGACTCACCAACATGACC
ACCCACATGTGATCCAAACACGTATGACACCCATGGACTCGCCATGGTAG
ATGGAGAAGCCCACAGGCCTCAAACCTACACAAAGGCAATTGAGGCAAAC
TGTGAATCAGAGAGATGGTATTCCCTTAAGAAAGAGCACCCTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_k22.b1 MSMg01no344_k22.b1 CHROMAT_FILE:
MSMg01no344_k22.b1 PHD_FILE: MSMg01no344_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:56 2005
         (519 letters)



>mm_chr6_128834594_128835517
          Length = 924

 Score =  661 bits (342), Expect = 0.0
 Identities = 484/550 (88%), Gaps = 43/550 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatttttgtcactgattttatcataacgtgattcttctatcttcaaaccatt 64
           ||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 183 gaattctctatttttgtgattgattttatcataacgtgatttttctatctttaaaccatt 242

                                                                       
Query: 65  caca-tgtctgtttttaatctcctgagttagagataggaatttgcccactattgtaagag 123
           |||| | ||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 243 cacact-tctgtttttaatctcctgagttagaaataggaatttgccaactattgtaagag 301

                                                                       
Query: 124 cca---a----tg----------ag--tg---accatccactgggcaccacatgcacttc 161
           |||   |    ||          ||  ||   ||||||||||||||||||||||||||| 
Sbjct: 302 ccagtcagtgctgactatacaccaggttgggtaccatccactgggcaccacatgcactta 361

                                                                       
Query: 162 cttgtccgtgatccgcttcgtggaatgggtttcaggaactgttaaagactcactcatggt 221
           ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 362 cttgtccgtgatctgcttcatggaatgggtttcaggaactattaaagactcactcatggt 421

                                                                       
Query: 222 gactctgctgatgatagcggcaggaaacccagggtgtgagcacatcgccttatttaaata 281
           ||||||||||||   ||  | || |||| |||||| ||||||||||||||||||||||| 
Sbjct: 422 gactctgctgat---ag--gaag-aaactcagggtctgagcacatcgccttatttaaat- 474

                                                                       
Query: 282 g-tcctcattgcacacgcacattatgagacctgcaaaaatataattaaaccgttttt-ga 339
           | ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 475 gatcctcattgcatacgcacattatgagacctgcaaaaacataattaaaccattttttga 534

                                                                       
Query: 340 gtggtaacataaggaactccattggctgctcagtaaaacaactttagcaaaggtgaaa-- 397
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  
Sbjct: 535 gtgataacataaggaactccattggctgctcagtaaaacaactttagtaaaggtgaaaat 594

                                                                       
Query: 398 ---tttctaaaagtgtgagtctggaaactatgagatcatatagcaaacaaaaacatttt- 453
              ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 595 tattttttaaaagtgtgattctggaaactatgcgatcatatagcaaacaaaaacattttt 654

                                                                       
Query: 454 ----aaaaaaaatataggccatgtgcttagcatgaacagaaataatctgatgcccagaaa 509
               |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 655 tttaaaaaaaaatataggtcatgtgcttagcatgaacagaaagaatctgatgcccagaaa 714

                     
Query: 510 taaataagcc 519
           ||||||||||
Sbjct: 715 taaataagcc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 924
Length adjustment: 10
Effective length of query: 509
Effective length of database: 914
Effective search space:   465226
Effective search space used:   465226
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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