BAC Information

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BAC

Clone NameMSMg01-345C21
Chromosome6 (Build37)
Map Location 140,767,117 - 140,946,122
singlet/doubletdoublet
Overlap genenone
Upstream genePik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
Downstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345C21.T7 (MSMg01no345_c21.b1)MSMg01-345C21.TJ (MSMg01no345_c21.g1)
ACCAG458064AG458065
length725766
length of high quality
(start - end)		483 (41 - 523)343 (63 - 405)
definitionCHROMAT_FILE: MSMg01no345_c21.b1 PHD_FILE: MSMg01no345_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005CHROMAT_FILE: MSMg01no345_c21.g1 PHD_FILE: MSMg01no345_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,945,769 - 140,946,122)(140,767,117 - 140,767,459)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATGCCTGTCACTGCTGAAAATGTCAAAGTATTCATCATCTATGGCAGCT
CCTATGTCTTAGGATCATTTGAGCCTGAATAATCAAGTATATACAAAGAC
CCTATCCGAAAAAAAATTAATAAATAGAGGCTGGGAAGATGAATGTATGA
GGATCTGCATTCAGAGCCCCAGTGCCCGGTTTTCAAACAGTCAGGTGTGG
CAACACACCTGCAATCCCAGAACTGGGTGGGGAGGAGAGGAGTGAACCAG
GAGCTCACTGGTCAGTAAGTCTAGGCAGTGTGTAAACTCTAGGTTCAGTG
AGAGACACTGAATGAAAAATATAAAGTATTGAGCAATAATGCATGTAAAA
GTATAACCCAATGTCAACCTCTGGCCTCCACACACATGTTACACAGGTAT
ATTACACACACACACACACACACACACACACACACACGCTACACATACAC
ATTCACTACACATTCACATCCATCCATACATANACATATGCTACACATAC
NCAAACCTACACACACTATTCCACCCACACCCCAAATGAATAAGACCATA
ATGGTTTAAAAGTTTAAATTACTCCTCTTAAACCCACTGGATATAATTAA
AAAGGATAAATGCCCCCCGGAGAAGTTAAAACCTCTTTATCATGGGCTCG
GGCTGGGTTACAAATGATGCCCAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGGGACTACTTCTCCACAGTGTAAGGCCCAGTTTAATAG
AGTCCCTAGTCGATAGAACTTAGAGAGGGGAGGCGGGAGTGTGTGCTCTT
ACATCATGCCCTTCAGCACACCTCGAGCCTGAGAGCACACACTGGGATTG
CTGGCAATTAGGAGCACTGGTCAGGGCCCTGGGGACTAACAATCTTGGCC
ATAGGTGGGCTTCTGGGCTTACTCAGTCCAGTGTGGATTTAGCTAGCATT
CAGATATAGTTAACTGTTGGCTATTCATAACTGTGGAAGAAACATGAGAT
CTATATAGCTTTTAGGTGCGTATGTGTGTGTATGTATGCGTGTGTATGTG
TGTGTGNGNNNTNNNTGNTTGTGTTGNTTGTGGTTTGGGGGTTTGGGTTG
TTGTGGGTTGTGTGTGTGGTTTTGTGTTTTGGTTNTGTGTTTTTTTTGGT
TTTTTTTGTTTTTTTGTTGGTGTTGTGTTGTTTTTTTGTTGTTTTTTTGT
NTTTGTTTTTGTTTTTTGTGTNGTTGTGTTGTTTGTTTTTTTTNTGTGTG
GTGTTTTGTTGTTTTTTTTGTTTGTTTTTTTTGTGTNTTTGTTTTGGTTG
TTTTTGTTGTGTTTGGTGGTTGGTGTGGTGTTTTGNGTGTTTGTGTTGTG
TTTTTTTTTTTGTTTTTGGTTGGTTGGTTTTTTTGTGTTGTTTGTTGTTG
TTTTGGTTTGTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_c21.b1 MSMg01no345_c21.b1 CHROMAT_FILE:
MSMg01no345_c21.b1 PHD_FILE: MSMg01no345_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
         (483 letters)



>mm_chr6_140945769_140946651
          Length = 883

 Score =  685 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgcctgtcactgctgaaaatgtcaaagtattcatcatctatggcagctccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattccatgcctgtcactgctgaaaatgtcaaagtattcatcatctatggcagctccta 295

                                                                       
Query: 65  tgtcttaggatcatttgagcctgaataatcaagtatatacaaagaccctatccgaaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tgtcttaggatcatttgagcctgaataatcaagtatatacaaagaccctatccgaaaaaa 235

                                                                       
Query: 125 aattaataaatagaggctgggaagatgaatgtatgaggatctgcattcagagccccagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aattaataaatagaggctgggaagatgaatgtatgaggatctgcattcagagccccagtg 175

                                                                       
Query: 185 cccggttttcaaacagtcaggtgtggcaacacacctgcaatcccagaactgggtggggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cccggttttcaaacagtcaggtgtggcaacacacctgcaatcccagaactgggtggggag 115

                                                                       
Query: 245 gagaggagtgaaccaggagctcactggtcagtaagtctaggcagtgtgtaaactctaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gagaggagtgaaccaggagctcactggtcagtaagtctaggcagtgtgtaaactctaggt 55

                                                                 
Query: 305 tcagtgagagacactgaatgaaaaatataaagtattgagcaataatgcatgtaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tcagtgagagacactgaatgaaaaatataaagtattgagcaataatgcatgtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_c21.g1 MSMg01no345_c21.g1 CHROMAT_FILE:
MSMg01no345_c21.g1 PHD_FILE: MSMg01no345_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:35 2005
         (343 letters)



>mm_chr6_140766917_140767659
          Length = 743

 Score =  663 bits (343), Expect = 0.0
 Identities = 343/343 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggactacttctccacagtgtaaggcccagtttaatagagtccctagtcgatagaactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggactacttctccacagtgtaaggcccagtttaatagagtccctagtcgatagaactta 260

                                                                       
Query: 61  gagaggggaggcgggagtgtgtgctcttacatcatgcccttcagcacacctcgagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaggggaggcgggagtgtgtgctcttacatcatgcccttcagcacacctcgagcctga 320

                                                                       
Query: 121 gagcacacactgggattgctggcaattaggagcactggtcagggccctggggactaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcacacactgggattgctggcaattaggagcactggtcagggccctggggactaacaa 380

                                                                       
Query: 181 tcttggccataggtgggcttctgggcttactcagtccagtgtggatttagctagcattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttggccataggtgggcttctgggcttactcagtccagtgtggatttagctagcattca 440

                                                                       
Query: 241 gatatagttaactgttggctattcataactgtggaagaaacatgagatctatatagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatagttaactgttggctattcataactgtggaagaaacatgagatctatatagcttt 500

                                                      
Query: 301 taggtgcgtatgtgtgtgtatgtatgcgtgtgtatgtgtgtgt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtgcgtatgtgtgtgtatgtatgcgtgtgtatgtgtgtgt 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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