BAC Information

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BAC

Clone NameMSMg01-345E07
Chromosome6 (Build37)
Map Location 107,716,873 - 107,717,203
singlet/doubletsinglet
Overlap genenone
Upstream geneTrnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345E07.T7 (MSMg01no345_e07.b1)MSMg01-345E07.TJ (MSMg01no345_e07.g1)
ACCAG458131AG458132
length736762
length of high quality
(start - end)		578 (35 - 612)495 (76 - 570)
definitionCHROMAT_FILE: MSMg01no345_e07.b1 PHD_FILE: MSMg01no345_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:41 2005CHROMAT_FILE: MSMg01no345_e07.g1 PHD_FILE: MSMg01no345_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAAC
CTGCTAAACAGCTTCAGTGCAGTAGCTGGATACACAATTAACTCAAACAA
ATCAATTGCCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCACAATAGTCACAAATAATCTAAAATACCTTGGT
GTGACTCTAATTAAGGAAATGAAAATCTGTATGATAAGAATTTCAAGTCT
CTGAAGAAAGAAATCAAAGATCTCAGAATATGGAAAGATCTCCCATGCTC
ATGGATGGGCAGGATTAATATAGTATAGATGGCTATGTTGCCAAAATCAA
TCTACAGATTCAATGCAATCCAAATCAAAACTCCAACTCAATTCTTCACA
GAATTAGAAATGGCAATTTGCAAATTCATCTGGAATAACAAAAATCCTAG
GATAGCAAAAACTATTCTCAACAATAAAAGAACCTCTGGTGGAATCACCA
TCCCTGAACCCAAGCTGTACTACAGAGAAATTGTGATTAAAAAAAAAAAA
AAAAAAAACAAACCTGCATGGTACTGGTACAATGACAGACCGGTAGATCA
ATGGAACAGTATTGAAGACCCAGAGGAGACAGGGAGAAAACATGCAGAAA
AAGCTCAAGAAAGGTGGGTAGATAAGAAAGGGAGCAATGTGAGCAATAAG
GGTAGCAAATGTCCCAGTTGTTTGGGCCCAGAATTN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGTTATCCCCTACTTCCTCTTCT
ATCAGGTTCAGTGTGTCTGGTTTTACATTGAGGTCTTTGATCTCTGTGGA
GTTGAGTTGTGGAGGGTAATATGGATCTATCTGCATTCTTCTACTTGCAG
CAGTCCAGTCTGATACGGGTGTTAAAGATGCTTTTTTTTTTAATCTCCTG
TGTGTATTTCTGGCTTCTTTATAAAAACATCAAGTATGTGGACTTAATCT
GAGTCTTCAATTTGATTCTATTACTCAATATGTCTGTTTTGGGGCTAATA
ATACCATGCTGATTTTATTTTTATAGTTTAGTAGTGTAATTTGAGATCAG
GGATGCTAATACTTCCAGAAGTTCTTTTATTATTCAGGAAATAGAAATCA
AGACAATTTTGACATTTCATCTTCTCTTTGCAATTCTTATTTTCAAACAG
TTCTGAAGGAATGATTTTTAAAAAAAGTTGGTACAAAGGTATTAATGTCA
TAAACCTAGTATGAATTGACACAGGCTGTTTTAGTTACTATTATATTGGC
TGAAAGAGACTCCATGACCCAAACAATTTATTAAGAAACCTTATGATTTG
TAAACTTGCTTAATATTTCCCGAGGGTTTAGCCCATTTTCCTTCCTTTCA
CGGAAACTTGGTTTCCGAGATATATTTCAAACATGGTGTCTTGGTCTTTA
TTACTTGATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_e07.g1 MSMg01no345_e07.g1 CHROMAT_FILE:
MSMg01no345_e07.g1 PHD_FILE: MSMg01no345_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:41 2005
         (495 letters)



>mm_chr6_107716309_107717203
          Length = 895

 Score =  609 bits (315), Expect = e-178
 Identities = 327/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 165 ttaatctcctgtgtgtatttctggcttctttataaaaacatcaagtatgtggacttaatc 224
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 895 ttaaactcctgtgtgtatttctggcttctttataaaaaaatcaagtatgtggacttaatc 836

                                                                       
Query: 225 tgagtcttcaatttgattctattactcaatatgtctgttttggggctaataataccatgc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tgagtcttcaatttgattctattactcaatatgtctgttttggggctaataataccatgc 776

                                                                       
Query: 285 tgattttatttttatagtttagtagtgtaatttgagatcagggatgctaatacttccaga 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgattttatttttatagtttagtagtgtaatttgagatcagggatgctaatacttccaga 716

                                                                       
Query: 345 agttcttttattattcaggaaatagaaatcaagacaattttgacatttcatcttctcttt 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agttcttttattattcaggaaatagaaatcaagacaattttgacatttcatcttctcttt 656

                                                                       
Query: 405 gcaattcttattttcaaacagttctgaaggaatgatttttaaaaaaagttggtacaaagg 464
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 655 gcaattcttattttcaaacagttctgaaggaatgattttttaaaaaagttggtgcaaagg 596

                                          
Query: 465 tattaatgtcataaacctagtatgaattgac 495
           |||||||||||||||||||||||||||||||
Sbjct: 595 tattaatgtcataaacctagtatgaattgac 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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