Query= MSMg01no345_f24.b1 MSMg01no345_f24.b1 CHROMAT_FILE:
MSMg01no345_f24.b1 PHD_FILE: MSMg01no345_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:49 2005
(455 letters)
>mm_chr6_54285604_54286458
Length = 855
Score = 859 bits (444), Expect = 0.0
Identities = 450/452 (99%)
Strand = Plus / Minus
Query: 4 ggaattccagcagcatgtcctgggcagcatcatgactacttctctatcaactgaggtcat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggaattccagcagcatgtcctgggcagcatcatgactacttctctatcaactgaggtcat 596
Query: 64 gattttgtcctttctagtaagaatttagagggttggagggaaggagagatctgtccttcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gattttgtcctttctagtaagaatttagagggttggagggaaggagagatctgtccttcc 536
Query: 124 atggcagcccaaaggctggaggcatctcatttacatgacaccctaacttaactcttaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atggcagcccaaaggctggaggcatctcatttacatgacaccctaacttaactcttaagt 476
Query: 184 tctgatatttcaaatacctgtgatggggaatagttctttgcattaggtgcccaggtttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctgatatttcaaatacctgtgatggggaatagttctttgcattaggtgcccaggtttct 416
Query: 244 tgttactgtgtggtttctctcttctaatggattctgccttttcacaatcttcagaaaatc 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 415 tgttactgtgtggtttctctcttctaatggactctgccttttcacaatcttcagaaaatc 356
Query: 304 atctgccagccaaaaccagcctgcttcctgagagagaaaagaaagaccatgaccctgcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atctgccagccaaaaccagcctgcttcctgagagagaaaagaaagaccatgaccctgcta 296
Query: 364 aaaactattgatatttccactccttgcatgctactctgggattttgaaggcaccagggac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaaactattgatatttccactccttgcatgctactctgggattttgaaggcaccagggac 236
Query: 424 ctgcactgtctctttaaatttccctgaactcc 455
|||||||||| |||||||||||||||||||||
Sbjct: 235 ctgcactgtccctttaaatttccctgaactcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_f24.g1 MSMg01no345_f24.g1 CHROMAT_FILE:
MSMg01no345_f24.g1 PHD_FILE: MSMg01no345_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:49 2005
(408 letters)
>mm_chr6_54053093_54053903
Length = 811
Score = 737 bits (381), Expect = 0.0
Identities = 403/412 (97%), Gaps = 5/412 (1%)
Strand = Plus / Plus
Query: 1 gagatgcttctgtaccaattccccggggaaggcttttccagatgtggaatgccacaggga 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 201 gagatgcttctgtaccaattccccagggaaggcttttccagatgtggaatgccacaggaa 260
Query: 61 gtggatctgccttggatagttgacagctgacagcctgtaatcttcactgctaaattgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggatctgccttggatagttgacagctgacagcctgtaatcttcactgctaaattgaag 320
Query: 121 cttgggccacagaaggcaacaacagctggactgttgggagccaagtccttgcgcat-ggc 179
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 321 cttgggccacagaaggcaacaacagctggactgttgggagccaaatccttgcgc-tcggc 379
Query: 180 acactgttccccgtagctattggcaggaacctcagcccccgaagcagcacatactgctcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acactgttccccgtagctattggcaggaacctcagcccccgaagcagcacatactgctcc 439
Query: 240 aggacaggag---agcctggactgggacctgtgctcttcaggaagcaccatgatgcactc 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggacaggaggagagcctggactgggacctgtgctcttcaggaagcaccatgatgcactc 499
Query: 297 agatgtgagccacagctgttagttggggatgcatttctaactgcatcctttanataattc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 agatgtgagccacagctgttagttggggatgcatttctaactgcatcctttaaataattc 559
Query: 357 tattcttcaattctcttaaagaccagttaactaagttgagacaggaatatac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tattcttcaattctcttaaagaccagttaactaagttgagacaggaatatac 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 811
Length adjustment: 9
Effective length of query: 399
Effective length of database: 802
Effective search space: 319998
Effective search space used: 319998
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
