BAC Information

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BAC

Clone NameMSMg01-345H06
Chromosome6 (Build37)
Map Location 37,761,331 - 37,761,778
singlet/doubletsinglet
Overlap genenone
Upstream genePtn, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636
Downstream geneLOC665102, Trim24, Svopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345H06.T7 (MSMg01no345_h06.b1)MSMg01-345H06.TJ (MSMg01no345_h06.g1)
ACCAG458273AG458274
length871774
length of high quality
(start - end)		35 (87 - 121)448 (84 - 531)
definitionCHROMAT_FILE: MSMg01no345_h06.b1 PHD_FILE: MSMg01no345_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:54 2005CHROMAT_FILE: MSMg01no345_h06.g1 PHD_FILE: MSMg01no345_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTTAATANNNNCNNCCCCTATACCACTCACTATATCNAGAGGATCCG
CGNAATTCACCTACTGAATTTCTGCCCACAGAATAGATTCCTTTTTATTT
TAGTTAATTTTTTTTTTAATATGGNNAGCGNNATTGTTATTANNNGAGTT
AAAGNTTTATATATTTTTTTTATTTTTATTTTTTTTATATTTTTTTTTTC
TTTTTTTTTTTTTTATTTTTTTTTTTTATTTTTTTTTTTATTTTTATGTC
GAGGACANNCCCAANNTTTCCCAAATTTTCTTTTNNTTTTTTTAACCCCC
TTAATTACTCCCCCCAAAAAAAACCCCCCCACAAATTTTTTTCCCAAAAT
TTTTTAAAATTTTTAAAAAAAAAAAACCCCNTTTCCTCCATTTTTTTCCC
TTTTAAAAAAAAANTCCCCCCCCCCATTTTTTTTTTTTCCCTTTTTTTTT
TTTTTCCCCTCCCCCCCCCCCCCCAAAAAAAAATATACAACCCCCCCTTC
CTAATATTNNNNTAACNNNNCCTCCNNNNTCCTCCCTCTTTAACACACAA
ACCAAAACCCCCCCCCCCCTACNNNTTCCTTCCTTTTTCCNCCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCCCCCTCCCCNCCTTCNCAACACCCACACC
ATATAAACCCCTCATCCTNCTTTCTTCTCTCCCTTNNNTTTTCACCCCAC
CACACCCCCAAACNCTTNCCTCCCCCACCAACACCNNCCCCCNCCTCCAC
ACCCCTCCCTCCCCNCCACCCAANCATTTCCCCNNNCATCTNNCCCCACC
NACCCCCCCTTNNAACACTCCNCTTTCTCTCCTCCTTCTCTTCCTTTCTT
TTTTTTTTATTTTCTTTTTTT

NNNAACTGGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACATTCTCAATTCTT
TGGCAAGAAGGAAATGAATTAAGATAGTATCCATTAAATATATGTATAAC
AAGAAGCCCCAGGTGACAGACAGCCCCAGAGTAAGGAAGGATCTTTAATG
TTTAACATGAGCTTATACATGCCTAAATAACTACATACAGCATCATTACA
GACCCAGAAGCCATGGGGAATGAGGGTGACTTCTGTGCAGCTCTGTACCT
CAGAACCCACTTGCTTTCCCAATGGTGATGGTGACTGTCTTTTTTCTTTT
CTTTTTTTCTTTTTTAATAATCTATAAACTATAGATAAACTATAACTCTT
CTTTTTTTTTTAAGCTTTATTTATTATCTATATGTAAGCACACTGTATCT
GTCTTCAGACACACCAGTAGAGGGGTCAGAGTCATTACAGATGATTGTAA
GCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCATAAGAACAGT
CAGTGCCCTTAACCGCTGAGCCATCTCTCCCGCCCCTGAAGGTGATTGCC
TTATTCAGGGTTTCTATTCCTGTACTAATTTATTGATTTTAAACCTAGTT
TGTAGAATAAAGGTTTTATTCCTTCTTAATTTTTTCTGATTTTTGTTCTC
TATTTATAGGTACGCCTTGTTCTTGAACTTTCTATCGTTTATTATTTCTC
TTCCCATTAGTTCTAAACTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_h06.g1 MSMg01no345_h06.g1 CHROMAT_FILE:
MSMg01no345_h06.g1 PHD_FILE: MSMg01no345_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:54 2005
         (448 letters)



>mm_chr6_37761266_37762113
          Length = 848

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacattctcaattctttggcaagaaggaaatgaattaagatagtatccattaaatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agacattctcaattctttggcaagaaggaaatgaattaagatagtatccattaaatatat 454

                                                                       
Query: 61  gtataacaagaagccccaggtgacagacagccccagagtaaggaaggatctttaatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtataacaagaagccccaggtgacagacagccccagagtaaggaaggatctttaatgttt 394

                                                                       
Query: 121 aacatgagcttatacatgcctaaataactacatacagcatcattacagacccagaagcca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aacatgagcttatgcatgcctaaataactacatacagcatcattacagacccagaagcca 334

                                                                       
Query: 181 tggggaatgagggtgacttctgtgcagctctgtacctcagaacccacttgctttcccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tggggaatgagggtgacttctgtgcagctctgtacctcagaacccacttgctttcccaat 274

                                                                       
Query: 241 ggtgatggtgactgtcttttttcttttctttttttcttttttaataatctataaactata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggtgatggtgactgtcttttttcttttctttttttcttttttaataatctataaactata 214

                                                                       
Query: 301 gataaactataactcttcttttttttttaagctttatttattatctatatgtaagcacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gataaactataactcttcttttttttttaagctttatttattatctatatgtaagcacac 154

                                                                       
Query: 361 tgtatctgtcttcagacacaccagtagaggggtcagagtcattacagatgattgtaagcc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 153 tgtatctgtcttcagacacaccagtagaggggtcagagtcattacagatggttgtaagcc 94

                                       
Query: 421 accatgtggttgctgggatttgaactca 448
           ||||||||||||||||||||||||||||
Sbjct: 93  accatgtggttgctgggatttgaactca 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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