Query= MSMg01no345_i10.b1 MSMg01no345_i10.b1 CHROMAT_FILE:
MSMg01no345_i10.b1 PHD_FILE: MSMg01no345_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
(499 letters)
>mm_chr6_61618088_61618987
Length = 900
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgaaaagttttccaggttacaaggcaacatgtgtttgctctgttagagactgc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgaaaagttttccaggttacaaggcaacatgtgtttgctctgttagagactgc 263
Query: 64 actgggtttggagatgcatcctgggaaggaaaaaaag-atgtatgcatattatctgccct 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 actgggtttggagatgcatcctgggaaggaaaaaaagtatgtatgcatattatctgccct 323
Query: 123 gatctgctcaactttgggattgatctgattgggaagacatgaagaagtgactggcagaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatctgctcaactttgggattgatctgattgggaagacatgaagaagtgactggcagaca 383
Query: 183 ttgaggaaatcttataaagaatgggcaatgtggtctgatggcactgaagcagcagcactg 242
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 ttgaggaaatcttataaagaatgggcaatgtggtctgatggcattgaagcagcagcactg 443
Query: 243 aaactcaacatgcttattatatatatcacaaactggtaggaggcaactagctaatctcag 302
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaactcaacatgcttattatatacatcacaaactggtaggaggcaactagctaatctcag 503
Query: 303 tagaaggactgtaagagaccacatccctttggaatgtggtagttgtggttgatgttctct 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 tagaaggactgtaagagaccacatccctttggaatgtggtagttgtggttgatgttttct 563
Query: 363 gcatacattattgtcatccatatagaaccaagggaagacatccatgcccttcttccaagt 422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 gcatacattattgtcatccatatagatccaagggaagacatccatgcccttcttccaagt 623
Query: 423 ccagtctacagaaggcttcacctttctcaagggtctgaggcactgtggtgattttgtcaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccagtctacagaaggcttcacctttctcaagggtctgaggcactgtggtgattttgtcaa 683
Query: 483 taccacatccattccaa 499
|||||||||||||||||
Sbjct: 684 taccacatccattccaa 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_i10.g1 MSMg01no345_i10.g1 CHROMAT_FILE:
MSMg01no345_i10.g1 PHD_FILE: MSMg01no345_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:59 2005
(525 letters)
>mm_chr6_61812674_61813598
Length = 925
Score = 884 bits (457), Expect = 0.0
Identities = 511/535 (95%), Gaps = 10/535 (1%)
Strand = Plus / Minus
Query: 1 ctggaatcaaaataatacatttctgtttattccatcttaaatgataaagtcagattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 567 ctggaatcaaaataatacatttctgtttattccatcttaaatgataacgtcagattttgt 508
Query: 61 tcaaatgcagaaatttcaattaaatgaagtttgtccttacttttcatgatgaaagaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcaaatgcagaaatttcaattaaatgaagtttgtccttacttttcatgatgaaagaaaaa 448
Query: 121 tagattcatcgtctctttgtcaatgatctaagctttttcttgagtttaatacatttaata 180
|||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 447 tagattcatcgtctctttgtcaatgatctaaggtttttcttgattttaatacttttaata 388
Query: 181 tttactcattcaaattatttatagttattggcattataaaactgtttaaatatcaagaag 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttaaacattcaaattatttatagttattggcattataaaactgtttaaatatcaagaag 328
Query: 241 gtctttaaattgctctttaatggcaaatttggggaatatgattggattaaatggaaactg 300
||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtctttacattgcacaagaatggcaaatttggggaatatgattggattaaatggaaactg 268
Query: 301 aagttatgagactttacattaaattttacaagcactcatactagaatccatgaacttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagttatgagactttacattaaattttacaagcactcatactagaatccatgaacttttc 208
Query: 361 taatttatgc----------attctgaaatgcatattttcatttttaatattttaatgat 410
||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct: 207 taatttaagctaagaaaatcattctgaaatgcatattttcatttttaagattttaatgat 148
Query: 411 ttccagacaagtatgaaatcacctaatgcaggctttgtctatgttactgtttttcttgag 470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 147 ttccagacaagtatgaaatcacctaatgcaggctttgtctatgttactctttttcttgag 88
Query: 471 tagtgcttttgaaagttcaatttcatatttcatatcattttcttgaatatgaccc 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tagtgcttttgaaagttcaatttcatatttcatatcattttcttgaatatgaccc 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
