Query= MSMg01no345_j03.b1 MSMg01no345_j03.b1 CHROMAT_FILE:
MSMg01no345_j03.b1 PHD_FILE: MSMg01no345_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
(629 letters)
>mm_chr6_35874131_35875161
Length = 1031
Score = 1164 bits (602), Expect = 0.0
Identities = 620/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 4 ggaattctacaatcatgtagatcacagcatactgctgttataaaaataaattattccttt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ggaattctacaatcaggtagatcacagcatactgctgttataaaaataaattattccttt 770
Query: 64 tattctataaatgtatatggcaccacgagctgttcaaatcacaaagctattgtacataat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tattctataaatgtatatggcaccacgagctgttcaaatcacaaagctattgtacataat 710
Query: 124 aagtgcccatcttaaatgaaatggtagttatataatatataaaa-cccttgctttgaaat 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 709 aagtgcccatcttaaatgaaatggtagttatataatatataaaaccccttgctttgaaat 650
Query: 183 -aaaaaagagtttataaattctcctagtgaacattaagcttcaacatgaacaaatatttg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaaaaaagagtttataaattctcctagtgaacattaagcttcaacatgaacaaatatttg 590
Query: 242 aggactcaatgttggaagtaccacctggatgttcatatgtctccataagagctaggtcac 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aggactcaatgttggaagtaacacctggatgttcatatgtctccataagagctaggtcac 530
Query: 302 attctggattatttttgcacactctacagaaagttacatgctactcagatttatctaagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attctggattatttttgcacactctacagaaagttacatgctactcagatttatctaagg 470
Query: 362 ctattcttaaaattataagcagagtcttaggtgtgtcctatgccttccaaaaggtaaaag 421
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 469 ctattcttaaaattataagcagagtcttaggtgtgttctatgccttccaaaaggtaaaag 410
Query: 422 ccattttatttccatatgtccttgctatctacagagccagtgtctcttaagactcaaaga 481
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 409 ccattttatttccatatgtccttgctgtctacagagccagtgtctcttaagactcaaaga 350
Query: 482 ggaaaatctgctgttggctcctttcaggagcacaaccttccatacctgccaagccctgat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggaaaatctgctgttggctcctttcaggagcacaaccttccatacctgccaagccctgat 290
Query: 542 gaaagagccagtactgccaagtctccactaggctgccagaaaccagttacaaagagactg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaaagagccagtactgccaagtctccactaggctgccagaaaccagttacaaagagactg 230
Query: 602 acatttgtgtagagggcacctgtacc 627
||||||||||||||||||||||||||
Sbjct: 229 acatttgtgtagagggcacctgtacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space: 631999
Effective search space used: 631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no345_j03.g1 MSMg01no345_j03.g1 CHROMAT_FILE:
MSMg01no345_j03.g1 PHD_FILE: MSMg01no345_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:03 2005
(443 letters)
>mm_chr6_35697761_35698602
Length = 842
Score = 818 bits (423), Expect = 0.0
Identities = 438/443 (98%), Gaps = 1/443 (0%)
Strand = Plus / Plus
Query: 1 aactagttaaatggtgaagttgactttccaaggtaataaggtagttctttgtgccactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactagttaaatggtgaagttgactttccaaggtaataaggtagttctttgtgccactgt 260
Query: 61 catcatttatgaaaaaagatagagcaaaagagaagagtcaaaaaccaccatggggagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcatttatgaaaaaagatagagcaaaagagaagagtcaaaaaccaccatggggagaga 320
Query: 121 gacatggatccatggttgagcacacctgctgcacaatcctggggaccagagtttggatct 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacggatccatggttgagcacacctgctgcacaatcctggggaccagagtttggatct 380
Query: 181 cggcatccaaacaagttgggcattcacacagatgcctgtagtccaagttcctataaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcatccaaacaagttgggcattcacacagatgcctgtagtccaagttcctataaaagg 440
Query: 241 agagacagggagattgctgggccatgctagcttctagtctcactgagaaaacaagtgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagacagggagattgctgggccatgctagcttctagtctcactgagaaaacaagtgggc 500
Query: 301 caggtttatggagaaatcctgtatcacatgagtttatagagtgatggaccagggagactt 360
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 501 caggtttatggagaaatcctgtatcagatgagtttatagagtgaaggaccagggagactt 560
Query: 361 gatgaccttttatgcatgcaaggggcgcacaccccccacctctcccatgggcatgcactc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 561 gatgaccttttatgcatgcaaggggcgcacaccccc-acctctcccatgggcatgcattc 619
Query: 421 tcagacaaagtcacgaacaaaca 443
|||||||||||||||||||||||
Sbjct: 620 tcagacaaagtcacgaacaaaca 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
