Query= MSMg01no346_a08.b1 MSMg01no346_a08.b1 CHROMAT_FILE:
MSMg01no346_a08.b1 PHD_FILE: MSMg01no346_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:36 2005
(473 letters)
>mm_chr6_108479688_108480560
Length = 873
Score = 803 bits (415), Expect = 0.0
Identities = 448/469 (95%), Gaps = 16/469 (3%)
Strand = Plus / Minus
Query: 5 gaattcagtcttctcccttgaatacagcagaaaaaagggcaactgtatctttctgggaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaattcagtcttctcccttgaatacagcagaaaaaagggcaactgtatctttctgggaat 476
Query: 65 catatattttgtctcttacctctaatgtccccacttatgtagtatttacatcctcctggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 catatattttgtctcttacctctaatgtccccacttatgtagtatttacatcctcctggg 416
Query: 125 cagaaaattcacagtgaattcctacccaatagtatcaccttaaccttacacaagcacaaa 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagaaaattcatagtgaattcctacccaatagtatcaccttaaccttacacaagcacaaa 356
Query: 185 tcctcagtttggtgggcacagaacaaagccactggtgtagaaattatataaaagggcatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tcctcagtttggtgggcacagaacaaagccactggtgtagaaattatataaaagggcatg 296
Query: 245 catataactgtggaaacgcatatggagatccagatgaacaaaactccttaggctactacc 304
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 catataactgtggaaacacatatggagatccagattaacaaaactccttaggctactacc 236
Query: 305 atgactggagttcctatgagaaaaggcagccctatctatctatctatctatctatctatc 364
||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 235 atgactggagttcctatgagaaaaggcagcc----------------ctatctatctatc 192
Query: 365 tatctatctatctatctatctatctatctatctatctatctatctatctatttctacgct 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 191 tatctatctatctatctatctatctatctatctatctatctatctatctatttctatgct 132
Query: 425 gccaggggctatatgaggtcactgcagtcatagcttgcctatgacaaag 473
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 131 gccaggggctatatgaggtcacagcagtcatagcttgcctatgacaaag 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_a08.g1 MSMg01no346_a08.g1 CHROMAT_FILE:
MSMg01no346_a08.g1 PHD_FILE: MSMg01no346_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:36 2005
(440 letters)
>mm_chr6_108294627_108295466
Length = 840
Score = 824 bits (426), Expect = 0.0
Identities = 436/440 (99%)
Strand = Plus / Plus
Query: 1 caaaataaatttcagtggcaaaagtgaagaccgttaactcctgggatcctgaatgtaacg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caaaataaatttcagtggcaaaagtgaagaccgttaactcctgggatcctgaatgtgacg 260
Query: 61 tgatgaagactaatgttgatctccatcatctgtatgcactactccccgaatggaatggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgaagactaatgttgatctccatcatctgtatgcactactccccgaatggaatggga 320
Query: 121 gattgtcaaactctaggcaaagggacacgattttctctaatttcgtgatgtttctgtagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgtcaaactctaggcaaagggacacgattttctctaatttcgtgatgtttctgtagt 380
Query: 181 tctttctttgttgtgagtaaacagaaggttttctgttccttttaatggctacatggttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tctttctttgttgtgagtaaacagaaggttttctgttccttttaatggctacacggttat 440
Query: 241 tttgttgtaggacaatattgaaattttagataaccattccctgtggggaggggaggaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttgtaggacaatattgaaattttagataaccattccctgtggggaggggaggaagg 500
Query: 301 gagacttagtcnagatcctgcnaaaacaatacagtatataactttgtgcttttgtgaggt 360
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagacttagtcaagatcctgcaaaaacaatacagtatataactttgtgcttttgtgaggt 560
Query: 361 tgcctaagtggaccaactcctagaaataaaattacagagtaaaatttcctccactgagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctaagtggaccaactcctagaaataaaattacagagtaaaatttcctccactgagga 620
Query: 421 agcacaccccattatcctta 440
||||||||||||||||||||
Sbjct: 621 agcacaccccattatcctta 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
