Query= MSMg01no346_a24.b1 MSMg01no346_a24.b1 CHROMAT_FILE:
MSMg01no346_a24.b1 PHD_FILE: MSMg01no346_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:39 2005
(519 letters)
>mm_chr6_118436292_118437209
Length = 918
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 5 gaattcttggcgatcatcttcagagaaagatgtctgaggagtcagaaggggcaagccatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcttggcgatcatcttcagagaaagatgtctgaggagtcagaaggggcaagccatt 659
Query: 65 gaagaacagctcctgtattcatttcactcacagccactgtgtcctgcgctatcaccatct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaagaacagctcctgtattcatttcactcacagccactgtgtcctgcgctatcaccatct 599
Query: 125 tgtaagatggcctcctgcatacagaatattcaaaactctgttctatagcttggacctttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtaagatggcctcctgcatacagaatattcaaaactctgttctatagcttggacctttg 539
Query: 185 cacgctgagcaggagttctgtgaccgctggctgtatgtagccttatgttttaaaacttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cacgctgagcaggagttctgtgaccgctggctgtatgtagccttatgttttaaaacttca 479
Query: 245 ctttgatctctaacaagttttttttcacatttaatgttgagtaataattttccataagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctttgatctctaacaagttttttttcacatttaatgttgagtaataattttccataagca 419
Query: 305 ttaaattcatcagaattttttcttgagtatggtttcctaataaaattctgaaatgcagtt 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 418 ttaaattcatcagaattttttcttgagtatggtttcctaat-aaattctgaaatgcagtt 360
Query: 365 aggaggtattgcttccgagtcacactcacagaggaaaggcattaacatctgggctgagtc 424
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 359 aggaggtattgcttccaagtcacactcacagaggaaaggcattaacatccgggctgagtc 300
Query: 425 cttttcctttcatattgcctcattcttcagtcagcaggcatttgttattcgttaatataa 484
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 299 cttttcctttcatattgcctcattcttcagtcagcaggcatttgttatttgtgaatataa 240
Query: 485 atatttaggttggcttttatggctcctgtccttca 519
|||||||||||||||||||||| ||||||||||||
Sbjct: 239 atatttaggttggcttttatggttcctgtccttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no346_a24.g1 MSMg01no346_a24.g1 CHROMAT_FILE:
MSMg01no346_a24.g1 PHD_FILE: MSMg01no346_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:39 2005
(531 letters)
>mm_chr6_118256389_118257315
Length = 927
Score = 911 bits (471), Expect = 0.0
Identities = 509/533 (95%), Gaps = 19/533 (3%)
Strand = Plus / Plus
Query: 3 ccagcatgctttgcttctcagaagaatattcctgcttcatcaatcttacttgcccgtagc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ccagcatgctttgcttctcagaagaatattcctgcttcatcaatcttacttgcccgtagc 247
Query: 63 ctca---------------atcacgagcaaagtgcctcacccagcagagcaagacaccaa 107
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctcaggagctggcagctgaatcacgagcaaagtgcctcacccagcagagcaagacaccaa 307
Query: 108 gagagctgcctgcgttaaccttgatccttccctgtctgcatttttttattttacattact 167
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagagctgc----gttaaccttgatccttccctgtctgcatttttttattttacattact 363
Query: 168 ttaccactgccacagtaagtcacaggtcctatcaattgtccctccatagggatgttgaca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttaccactgccacagtaagtcacaggtcctatcaattgtccctccatagggatgttgaca 423
Query: 228 tggagactgctggcaggtggcaggtggggaaaccctcagctcttcgctgatgtctgtggg 287
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 424 tggagactgctggcaggtggcaggtggggaaatcctcacctcttcgctgatgtctgtggg 483
Query: 288 aacagagaccctgaccatcaagccactgggaatatctcatttgcccacgttgtgtctcta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aacagagaccctgaccatcaagccactgggaatatctcatttgcccacgttgtgtctcta 543
Query: 348 aagtgaaagttaatcaatatggtagaccccagcctcagctgcagccacacaggcagcctg 407
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 544 aagtgaaagttaatcaatatggtagaccccagcctcagctgcagccacacgggcagcctg 603
Query: 408 gtaaaagcgacctcgctattaacaggaggcgcgcgtttgtggtcctgttgtttaagactg 467
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 604 gtaaaagcgacctcgctattaacaggaggagcgcatttgtggtcctgttgtttaagactg 663
Query: 468 gtagtccttgaaagctgtggggtgcgggcctgtgggcctgctgggctgcagga 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtagtccttgaaagctgtggggtgcgggcctgtgggcctgctgggctgcagga 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 927
Length adjustment: 10
Effective length of query: 521
Effective length of database: 917
Effective search space: 477757
Effective search space used: 477757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
