BAC Information

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BAC

Clone NameMSMg01-346D04
Chromosome6 (Build37)
Map Location 134,090,511 - 134,091,015
singlet/doubletsinglet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346D04.T7 (MSMg01no346_d04.b1)MSMg01-346D04.TJ (MSMg01no346_d04.g1)
ACCAG458841AG458842
length718726
length of high quality
(start - end)
517 (42 - 558)562 (72 - 633)
definitionCHROMAT_FILE: MSMg01no346_d04.b1 PHD_FILE: MSMg01no346_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005CHROMAT_FILE: MSMg01no346_d04.g1 PHD_FILE: MSMg01no346_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTATGGAGTGTAGTTTATCGATTTAACAGCTAATGCACACATATAAGCGA
ATACATACAATATTTGTCTTTTGGCATCTAGGATACTCACTCAAGATGAT
TTTTTTCTAGTTTTATCCTCTCGCTTGGGGATTTCATGATTTCATTTTTT
ATAACAGCTGTATAAATGTATCCATTCTTCTGTTGAAGGATATTTAGGTT
TTGGAATTTTTTTTTCCAATTTCTGGCTGTTATGAATAGAGCAGCAGTGA
ATGTGGTTGAATGTGGTCGAGCAATGTCTCTGTGATAGAATGGAACATCC
TTCATACGCCGGAGAGTGGGATGCTGGATCTTGAGGTAGACCAATCCCCA
CTTTCCTGAGGAAATACCACACTGATTTCCATAGTGGCTGTACAAGCTTG
CATTCCCAACACCAACGGATAGGTGTTCCCTTGTTCCACATCCTGGCCAG
CCTAAGCTGTCACATGTTTTATTGATTTTCAGCCATTCTGACAGGTGTAA
AATGAAATCTCAAGGAAGTTTTTACTTGAATTCCCTGGATGGCTGATGAT
ATTGAACACTTCTTTAAATAATTCTCAGCCTCTCCTCCCTTGAAAAATTC
TTTGTTGAGATCTGTATGCCACTAAAAAAAATTTGGTCACCTGGTTGCCC
ATTCCATTTTCCCGAACN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAGAATAAGGAGTAGGCAGTCCTAGAC
TAAGAGGGAGGAGGGAAGCTGGGCTAGCCTGCCAGGAAAGCCCCAGCAGA
GGGCACAGCAAGAACCTGGGAACCTCTGTGTCTAGAGGATTCATTCCAGA
TGTTGAAAGAGACCATGTCACAACAGCGCTCCTGCAGACTACCACGGAGA
GTTATCACTTAAGCTGAGACACGCAGGCAAAAATCACTGCCCTGACACGA
ATCCATAGTTTGCTGATTATCCACAGGTCACCAGTAATGTGCTACAGCTC
CACAGTGGGTAGTTATCTTGGTGACCATCCATCTATCTATCTATCCATCC
ATCCATCCATCCATCCATCCATCCATCCATCTGTCCAAGGGGTGACACGA
GTTCTTCAGCAACAGAACAATAGTTCAGAAAATAGGTTCCAGCCACAAAC
CAGTTCTGGAGCCACATCAGACAACTGGCTTAGCATCCATGTAAAATAAG
CAGATTANACACACAGCTGCACATAGCATAAAGATTAAGAATCTAAGTTG
TGAGGTTAGATGAGACGGAATTTGAATCTTGACCCTGTCATCTTACTAGT
TCTGTGACCAATATTGTAAAATTACTTAAATTCCTGGAGCTCTGGGCTAA
NTGGTACAGTGCTTTGCTAATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_d04.g1 MSMg01no346_d04.g1 CHROMAT_FILE:
MSMg01no346_d04.g1 PHD_FILE: MSMg01no346_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:50 2005
         (562 letters)



>mm_chr6_134090511_134091474
          Length = 964

 Score =  878 bits (454), Expect = 0.0
 Identities = 487/505 (96%), Gaps = 14/505 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagaataaggagtaggcagtcctagactaagagggaggagggaagctgggctagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagaataaggagtaggcagtcctagactaagagggaggagggaagctgggctagcctg 446

                                                                       
Query: 61  ccaggaaagccccagcagaggg--cacagcaagaacctgggaacctctgtgtctagagga 118
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaggaaagccccagcagagggcacacagcaagaacctgggaacctctgtgtctagagga 386

                                                                       
Query: 119 ttcattccagatgttgaaagagaccatgtcacaacagcgctcctgcagactaccacggag 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcattccagatgttgaaagagaccatgtcacaacagcgctcctgcagactaccacggag 326

                                                                       
Query: 179 agttatcacttaagctgagacacgcaggcaaaaatcactgccctgacacgaatccatagt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 325 agttatcacttaagctgagacacgcaggcaaaaatcactgccctgacacgaatccgtaat 266

                                                                       
Query: 239 ttgctgattatccacaggtcaccagtaatgtgctacagctccacagtgggtagttatctt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgctgattatccacaggtcaccagtaatgtgctacagctccacagtgggtagttatctt 206

                                                                       
Query: 299 ggtgaccatccatctatctatc---t-atccatccatccatccatccatccatccatcca 354
           ||||||||||||||||||||||   | |||||||||||||||||||||||||||||||||
Sbjct: 205 ggtgaccatccatctatctatccattcatccatccatccatccatccatccatccatcca 146

                                                                       
Query: 355 tccatc--------tgtccaaggggtgacacgagttcttcagcaacagaacaatagttca 406
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tccatccatccatctgtccaaggggtgacacgagttcttcagcaacagaacaatagttca 86

                                                                       
Query: 407 gaaaataggttccagccacaaaccagttctggagccacatcagacaactggcttagcatc 466
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gaaaataggttcaagccacaaaccagttctggagccacatcagacaactggcttagcatc 26

                                    
Query: 467 catgtaaaataagcagattanacac 491
           |||||||||||||||||||| ||||
Sbjct: 25  catgtaaaataagcagattaaacac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space:   526608
Effective search space used:   526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)