BAC Information

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BAC

Clone NameMSMg01-346N19
Chromosome6 (Build37)
Map Location 76,054,391 - 76,230,948
singlet/doubletdoublet
Overlap geneEG546907
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneLOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346N19.T7 (MSMg01no346_n19.b1)MSMg01-346N19.TJ (MSMg01no346_n19.g1)
ACCAG459347AG459348
length764769
length of high quality
(start - end)		476 (61 - 536)500 (61 - 560)
definitionCHROMAT_FILE: MSMg01no346_n19.b1 PHD_FILE: MSMg01no346_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:39 2005CHROMAT_FILE: MSMg01no346_n19.g1 PHD_FILE: MSMg01no346_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,054,391 - 76,054,866)(76,230,454 - 76,230,948)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAAAGT
TACAAAAAATAACAATGTTTGAGAAACATTTAAAAAAATATTCAGTATCT
TCAGGTATCAGACAACTGGAAATCTAAACCAGTTTGAGACTTCACCTCAC
AGCAGTCAGATTACTAAAGCAGATGACAGCTCACGCCAGCATAGAAGTAG
AAAAGGCAAACACACATTCATTGCTGGTAGAAGTACAAATATGTATAGTA
ACTACAGCAATTACTCAGGAAGACTGATATCAATATGCCTCAATCTACCT
ACTACTAATTTACAAAACAAGTAATATCCACAATGATTTATAAAAATTTG
CCCTTATACACAGAGATCAGTGTGGTCTTAACATCTCTATTATTTGCTAT
AACAGTTTCCATATTTTCTTATATGTAGTATAAGAAGCTAAGCTGGTCCA
CAATCTGAGGTAGATATGATTGATCATAACCAAATTCAATCCTCCAAATC
GTCTCTCTTGACTTCAAGGTTTCCCTCCTCCTCAGTTTCTTTCAGCCATC
CCCTAATTTAATCACAGAGGCCAGTAGCTTCTGCCCATTGGTTGGGTGCA
AATATCTGCATCTGACTCTTTCAGCTGCCTGTTGAGTCTTCCCGAGAGGG
GCCATGGCAGCCTCCCTTTTTTGGAGAATNCCAAACCCCCCCAAAAGGGG
CCGGGCCGCGACACCCAAATTTGCCCACACATGATGTGGTATGTGGCCCC
CCTAAAATTCACCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAATGCTAGTCTTTATTCAGACATGAACATTGTGTCTTATA
CTTAGGCAGTCTTTATTCCCAGATACAAGGTTGAGGAAGTTTTCATAAAA
TGGCTATTACATCTTAAGTCAAATTATCTTGAAAACTGGGTCATATTCTT
TGGGATACCTTACAATTTCTGAGTTCCTAACGTGTAGATTGTCTGTCAAT
TCTATAGTCTTTCCTCTTGTGTGCTTTAAAGTTGCAAGCTTTGACTTCTG
AACTTTCAAAGGGACAAGGAATTGTAGTACTGTAAGAACCACAACATGCA
GAGCGCTGAACGATGCTAGTGGCATTCCTATTTGCCTTGTGACTTTTTAT
ATTTCAGTCTCTCATATGTCACAAACCTATATATAGATTCTAGCTGTACT
CTGAACTCATCATATTATGTGATATGTATTCTAGCCTATGAGAGAAAATT
GGACTGTTTCATCAGTGAATGGATAATTCTTTGTCTCTGTGTCTCTGTCT
CTGTCTCTGTCAACTCTTAAGTATAACCCAAAACTTGGGCCACTGTTCTA
TTATGCTGAGGGTTATGCTCAGAGCCTTGGTTTATGCTCAAGGCAAGTGT
TCTATCCATAACCCCCGCACAGTCCAGATAATACTTTTAAGAAAGATATT
TTTTTAAAAAAAATTAATTTTTAATTATGTGGAAAAATGTTTTGGACAGG
GGGAACCGCCACAGCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_n19.b1 MSMg01no346_n19.b1 CHROMAT_FILE:
MSMg01no346_n19.b1 PHD_FILE: MSMg01no346_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:39 2005
         (476 letters)



>mm_chr6_76054191_76055066
          Length = 876

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatgtttgagaaacatttaaaaaaatattcagtatcttcaggtatcagacaactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaatgtttgagaaacatttaaaaaaatattcagtatcttcaggtatcagacaactgga 260

                                                                       
Query: 61  aatctaaaccagtttgagacttcacctcacagcagtcagattactaaagcagatgacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctaaaccagtttgagacttcacctcacagcagtcagattactaaagcagatgacagc 320

                                                                       
Query: 121 tcacgccagcatagaagtagaaaaggcaaacacacattcattgctggtagaagtacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacgccagcatagaagtagaaaaggcaaacacacattcattgctggtagaagtacaaat 380

                                                                       
Query: 181 atgtatagtaactacagcaattactcaggaagactgatatcaatatgcctcaatctacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtatagtaactacagcaattactcaggaagactgatatcaatatgcctcaatctacct 440

                                                                       
Query: 241 actactaatttacaaaacaagtaatatccacaatgatttataaaaatttgcccttataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actactaatttacaaaacaagtaatatccacaatgatttataaaaatttgcccttataca 500

                                                                       
Query: 301 cagagatcagtgtggtcttaacatctctattatttgctataacagtttccatattttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagatcagtgtggtcttaacatctctattatttgctataacagtttccatattttctt 560

                                                                       
Query: 361 atatgtagtataagaagctaagctggtccacaatctgaggtagatatgattgatcataac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgtagtataagaagctaagctggtccacaatctgaggtagatatgattgatcataac 620

                                                                   
Query: 421 caaattcaatcctccaaatcgtctctcttgacttcaaggtttccctcctcctcagt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaattcaatcctccaaatcgtctctcttgacttcaaggtttccctcctcctcagt 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no346_n19.g1 MSMg01no346_n19.g1 CHROMAT_FILE:
MSMg01no346_n19.g1 PHD_FILE: MSMg01no346_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:39 2005
         (500 letters)



>mm_chr6_76230282_76231181
          Length = 900

 Score =  872 bits (451), Expect = 0.0
 Identities = 484/495 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgctagtctttattcagacatgaacattgtgtcttatacttaggcagtctttattccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aatgctagtctttattcagacatgaacattgtgtcttatacttaggcagtctttattccc 608

                                                                       
Query: 61  agatacaaggttgaggaagttttcataaaatggctattacatcttaagtcaaattatctt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 607 agatacaaggttgaggaagttttcataaaatggctattacatctaaagtcaaattatctt 548

                                                                       
Query: 121 gaaaactgggtcatattctttgggataccttacaatttctgagttcctaacgtgtagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 gaaaactgggtcatattctttgggataccttacaatttctgagttcctaacttgtagatt 488

                                                                       
Query: 181 gtctgtcaattctatagtctttcctcttgtgtgctttaaagttgcaagctttgacttctg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 487 gtctgtcaattctatagtctttccttttgtgtgctttaaagttgcaagctttgacttctg 428

                                                                       
Query: 241 aactttcaaagggacaaggaattgtagtactgtaagaaccacaacatgcagagcgctgaa 300
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct: 427 aactttcaaagggacaaggaattgtagtactgtatgaaacacaacatgcagagtgctgaa 368

                                                                       
Query: 301 cgatgctagtggcattcctatttgccttgtgactttttatatttcagtctctcatatgtc 360
            |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgatgctagtggcattcttttttgccttgtgactttttatatttcagtctctcatatgtc 308

                                                                       
Query: 361 acaaacctatatatagattctagctgtactctgaactcatcatattatgtgatatgtatt 420
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 307 acaaacctatatatagattctagctgtactctgaactcatgatattatatgatatgtatt 248

                                                                       
Query: 421 ctagcctatgagagaaaattggactgtttcatcagtgaatggataattctttgtctctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctagcctatgagagaaaattggactgtttcatcagtgaatggataattctttgtctctgt 188

                          
Query: 481 gtctctgtctctgtc 495
           |||||||||||||||
Sbjct: 187 gtctctgtctctgtc 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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