BAC Information

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BAC

Clone NameMSMg01-347D20
Chromosome6 (Build37)
Map Location 117,291,130 - 117,291,650
singlet/doubletsinglet
Overlap geneEG640142
Upstream geneMarch8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347D20.T7 (MSMg01no347_d20.b1)MSMg01-347D20.TJ (MSMg01no347_d20.g1)
ACCAG459630AG459631
length795756
length of high quality
(start - end)		418 (45 - 462)521 (82 - 602)
definitionCHROMAT_FILE: MSMg01no347_d20.b1 PHD_FILE: MSMg01no347_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:09 2005CHROMAT_FILE: MSMg01no347_d20.g1 PHD_FILE: MSMg01no347_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTCTTTACCTAAATGGCATCTTCCAGCACCATGAAAGCCAGCC
GAGAAGAAAGGATCTTCCAGCCCAGTCCCACCTTGATTTTTTTCATGTCT
TGAAGCCAAAACCATACAGTTTTCAGCCAGAGGGTCTTGCTGTCTAATTC
TGGCACATAACCAACAGCTGTGACAGTGGCCTACGGTTTGAGAGGCCTCT
AGGACTTCTCTGGCCATTAACTCATAAGGCAATAGCCCACCTCTACTACT
GGGCTTTTCACACCAAACTCTTGTGTCTTGTGGGTGTGCCTTTTTGTGCA
GAAAGACTCCATCTAAATTTCTTAACTACTCTTTTACTGCTCCTTCAACT
CTTTGCGCAAATCTGTGAGACTCAAGAGTTAGCACCCTCTAGAAAGACAC
ACTTTACAGAGGTTCAGTATGATCTCTGAATGTTTACCACTGTTTGTTCT
AATTATATGCCAGTTGTCCTTGTACTTCTGAATGCACATCTATGACTGAT
AAGCTTTCCAGTTTCATTACTGCTTGAATTGATCTCCCGATTTGTGCCTA
TTATCAATCGTGCCCCTGTACGTTAATTCCCTTTCCTTTTTACCTTCCCC
TTTCCCTCCGCTTTCTCTTCTCCTCTTATTCCCTTTTACTTTCATCCTCT
TCAATTGTTTGAAATTTCTTTCCCTTTCTCCTTTCCCCCTCCTTTCATTC
CGCTTTCCCTTTTCTTATCTCCTCTTTTTTTATCCACTTCTTGTG

TTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGACTTTTTTAACCTGT
TCTTGTGAATGTGATCCTAGCTAGGTTGGGAGGATCAACAGGCATGAGGG
CTGTATGGGCTTTAAATGCCCACAAGTAGGAGACAGCAAGTGGGAGCCAG
ACATGGGAATATTCTGCCCAAGAGGACATCTGCCTGGTTCTCTGGACTGC
TAAGAGATTACAAAAGTTTGGTCTTTTATGGGCATCTTACTGATTTTCAA
ATATTGATAGTTGATTATTTTATATATTTATCTAATATGTATTTTACATA
TATTATAATATCTTATTTTAATTTTCTGTCCATTGTGTTGGGCCAAACAA
AGCTAGTTAGTCACATGTCCTGCAGGTGTCTTCCCCTGCCAAGTCCCTGA
TCCATCAGACACTTCCCTAAGCACTCACTGGCTGCCACCAGCTCAAGATA
AGAATATCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTAAGATGAA
AGGATGGACCATCCAGAGACTACCTCACCTGGGGATCCATCCCATAATCA
GCCACCAAACTCAGACACTATTACATATGCCAGCAAGATTTGGCTGAAAA
AACCCTGATATAGATTGTTCCTTGTGAAGCCAATGCCCGTGCCTGGTAAA
TACCTAAAGGGGAGGCTTCTCCGTCCGCCTATTGGATGGGAATATTGGGC
CCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_d20.g1 MSMg01no347_d20.g1 CHROMAT_FILE:
MSMg01no347_d20.g1 PHD_FILE: MSMg01no347_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:09 2005
         (521 letters)



>mm_chr6_117290738_117291658
          Length = 921

 Score =  984 bits (509), Expect = 0.0
 Identities = 518/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgacttttttaacctgttcttgtgaatgtgatcctagctaggttgggaggatcaacag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 913 tttgacttttttaacctgttcttgtgaatgtgagcctagctaggttgggaggatcaacag 854

                                                                       
Query: 61  gcatgagggctgtatgggctttaaatgcccacaagtaggagacagcaagtgggagccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gcatgagggctgtatgggctttaaatgcccacaagtaggagacagcaagtgggagccaga 794

                                                                       
Query: 121 catgggaatattctgcccaagaggacatctgcctggttctctggactgctaagagattac 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 793 catgggaatattctgcccaagaggacatccgcctggttctctggactgctaagagattac 734

                                                                       
Query: 181 aaaagtttggtcttttatgggcatcttactgattttcaaatattgatagttgattatttt 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aaaagtttggtcttttacgggcatcttactgattttcaaatattgatagttgattatttt 674

                                                                       
Query: 241 atatatttatctaatatgtattttacatatattataatatcttattttaattttctgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatttatctaatatgtattttacatatattataatatcttattttaattttctgtcc 614

                                                                       
Query: 301 attgtgttgggccaaacaaagctagttagtcacatgtcctgcaggtgtcttcccctgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attgtgttgggccaaacaaagctagttagtcacatgtcctgcaggtgtcttcccctgcca 554

                                                                       
Query: 361 agtccctgatccatcagacacttccctaagcactcactggctgccaccagctcaagataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agtccctgatccatcagacacttccctaagcactcactggctgccaccagctcaagataa 494

                                                                       
Query: 421 gaatatccatggaaggagttacagagacaaagtttggagctaagatgaaaggatggacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaatatccatggaaggagttacagagacaaagtttggagctaagatgaaaggatggacca 434

                                                    
Query: 481 tccagagactacctcacctggggatccatcccataatcagc 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tccagagactacctcacctggggatccatcccataatcagc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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