BAC Information

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BAC

Clone NameMSMg01-347G24
Chromosome6 (Build37)
Map Location 26,760,025 - 26,922,278
singlet/doubletdoublet
Overlap genenone
Upstream geneEG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347G24.T7 (MSMg01no347_g24.b1)MSMg01-347G24.TJ (MSMg01no347_g24.g1)
ACCAG459779AG459780
length783768
length of high quality
(start - end)		457 (50 - 506)427 (82 - 508)
definitionCHROMAT_FILE: MSMg01no347_g24.b1 PHD_FILE: MSMg01no347_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:25 2005CHROMAT_FILE: MSMg01no347_g24.g1 PHD_FILE: MSMg01no347_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,921,830 - 26,922,278)(26,760,025 - 26,760,451)
sequence
NNNCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCAGTAGACCTCAGATTCTTTGAGCTTAGAATTCTCCTAC
CTCTATCTCCATAGAGCTGGTAGGGCAGGACTATAATCCCAGCACTGTGG
AGGTAGATGTAGAATCATTGAAACCAGGACTTCCTGCTCTTTAGGTGGGT
ACTTTCCCAATTTATTTGCATCTCCAGCCAGAAAATGTGTAATATTGAAA
TCAGATGAAATATGCCTATCTCTTCAAACATATTTACAGTGAAAATAATT
TCTTCTACATTTTGGAAAAAAGGGATAATATAGCATCATTGATAGACAGG
CCTCAACCGTAGATCAGCCCATCAACCTCATGTGTATGTAAGGAAAAGCT
CTTTCAATGATGCTGACTCTCCTGGATCTTTGTGTGCCCAATACTTCAGA
GCTTGACATGTCACCTCCAGCTCCAAAGCCTGAGTCTTAGTTTCTGTTAC
TCTAGGCTTTAGAAGACACAAAAAGGGTTTAAGCACCCAGGTTGCTAGCC
GGGGCTTTAATTTCCAGTGGGTCTGTCTTTTGTGAGATTTTGTTACCTTT
GACTTCCTGGGGAATGGGGAATCCTAAACAGCCGCCTGCACACTTTTAGC
CCGTGCCCGCGCAGCCCCCTTTTTATTTTTCCCCCTTTCCTTTTTTTTCT
CCCGCTCCCCCTATTCTCCCCGGTTCTTTTTATTGGGGGGTTTTCTTCTT
ATCCCCGGTTTCCCCCTACCCTCATTGAGGGGC

NNNNCCCGAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAGAAAGGAGAAAAA
TTTTACATATTCAAACTTCATTACATCAACCATTATTAGAAATGTTTACT
TTTCAGGTTTCTGAGCTTTCAAGTTAAAGTTTCAGTAATGGCAATAGCCA
GCAATGTTCATCAATCAAAGAGAATAAACAGAAGTTGAATGGGTGCCTTG
GAAGACTGGCAGAATAGTTTTCTGTTTTTATCAATTCATTAGCATAAATT
ACTGAATTAAAACCACGATAGCAGTAGATTTGGGTTTATATAGATTATTT
AAATATAGGAGTAGAACAGAAGATTAAAAATGGTTCCAAGAGACGAGTGC
AAGTAATCAAGGGCAAAGTTAGGCAATGAGATATAGATTGAGAAATAATA
AATATTAGATCAATAATTTTGGAACTGATATCATCTTCTTAGTATGCACT
TTTTCATACTCTTAGGGTTTTGATATATTTTTATTTATTATACTTCATGA
ACAAAAGAATACCANGTCTAATATTATTAGAAACAATTATATTTTAAATT
TGACATTGGGGTCAATTTTAAAGAACACATTTGAATAATTCTACCAAATT
TAGAGGAACCTATCTNAAAATGAAGAATAAAACTANGGCCGAAATAAATT
GCTGCATAAATTTGGCAAGGAAATAAAATCACCGCAAATCCTTGAATTTA
TTGCCCCTCCTCCGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_g24.b1 MSMg01no347_g24.b1 CHROMAT_FILE:
MSMg01no347_g24.b1 PHD_FILE: MSMg01no347_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:25 2005
         (457 letters)



>mm_chr6_26921622_26922478
          Length = 857

 Score =  814 bits (421), Expect = 0.0
 Identities = 442/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   tctccagtagacctcagattctttgagcttagaattctcctacctctatctccatagagc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctccagtagacctcagattctttgagcttagaattctcctacctctatctccatagagc 598

                                                                       
Query: 69  tggtagggcaggactataatcccagcactgtggaggtagatgtagaatcattgaaaccag 128
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tggtaggacaggactataatcccagcactgtggaggtagatgtagaatcattgaaaccag 538

                                                                       
Query: 129 gacttcctgctctttaggtgggtactttcccaatttatttgcatctccagccagaaaatg 188
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 537 gactccctgctctttaggtgggtactttcccaatttagttgcatctccagccagaaaatg 478

                                                                       
Query: 189 tgtaatattgaaatcagatgaaatatgcctatctcttcaaacatatttacagtgaaaata 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgtaatattgaaatcagatgaaatatgcctatctcttcaaacatatttacagtgaaaata 418

                                                                       
Query: 249 atttcttctacattttggaaaaaagggataatatagcatcattgatagacaggcctcaac 308
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 417 atttcttctacatttttgaaaaaagggataatatagcatcattgatagacagacctcaac 358

                                                                       
Query: 309 cgtagatcagcccatcaacctcatgtgtatgtaaggaaaagctctttcaatgatgctgac 368
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtagatcagcccatcaacctcatgggtatgtaaggaaaagctctttcaatgatgctgac 298

                                                                       
Query: 369 tctcctggatctttgtgtgcccaatacttcagagcttgacatgtcacctccagctccaaa 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tctcctggatctttgtgtgcccaatacttcagagcttgacatgtcacctccagctccaaa 238

                                        
Query: 429 gcctgagtcttagtttctgttactctagg 457
           |||||||||||||||||||||||||||||
Sbjct: 237 gcctgagtcttagtttctgttactctagg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_g24.g1 MSMg01no347_g24.g1 CHROMAT_FILE:
MSMg01no347_g24.g1 PHD_FILE: MSMg01no347_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:25 2005
         (427 letters)



>mm_chr6_26759825_26760651
          Length = 827

 Score =  756 bits (391), Expect = 0.0
 Identities = 418/427 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggagaaaggagaaaaattttacatattcaaacttcattacatcaaccattattagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggagaaaggagaaaaattttacatattcaaacttcattacatcaaccattattagaa 260

                                                                       
Query: 61  atgtttacttttcaggtttctgagctttcaagttaaagtttcagtaatggcaatagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtttacttttcaggtttctgagctttcaagttaaagtttcagtaatggcaatagccag 320

                                                                       
Query: 121 caatgttcatcaatcaaagagaataaacagaagttgaatgggtgccttggaagactggca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgttcatcaatcaaagagaatgaacagaagttgaatgggtgccttggaagactggca 380

                                                                       
Query: 181 gaatagttttctgtttttatcaattcattagcataaattactgaattaaaaccacgatag 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaatagttttctgtttttatcaattcattagcataaataactgaattaaaaccacgatag 440

                                                                       
Query: 241 cagtagatttgggtttatatagattatttaaatataggagtagaacagaagattaaaaat 300
           ||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 441 cagtagatttgggtttatagagatcatttaaatataagagtaggacagaagattaaaaat 500

                                                                       
Query: 301 ggttccaagagacgagtgcaagtaatcaagggcaaagttaggcaatgagatatagattga 360
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 501 ggttccaagagacgagtgcaagtaatcaagagcaaagttaggcaatgagatacagattga 560

                                                                       
Query: 361 gaaataataaatattagatcaataattttggaactgatatcatcttcttagtatgcactt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatattaaatattagatcaataattttggaactgatatcatcttcttagtatgcactt 620

                  
Query: 421 tttcata 427
           |||||||
Sbjct: 621 tttcata 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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