BAC Information

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BAC

Clone NameMSMg01-347I11
Chromosome6 (Build37)
Map Location 53,574,826 - 53,734,647
singlet/doubletdoublet
Overlap geneCreb5, LOC384386
Upstream geneHibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347I11.T7 (MSMg01no347_i11.b1)MSMg01-347I11.TJ (MSMg01no347_i11.g1)
ACCAG459848AG459849
length778778
length of high quality
(start - end)		422 (73 - 494)450 (75 - 524)
definitionCHROMAT_FILE: MSMg01no347_i11.b1 PHD_FILE: MSMg01no347_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:32 2005CHROMAT_FILE: MSMg01no347_i11.g1 PHD_FILE: MSMg01no347_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,734,226 - 53,734,647)(53,574,826 - 53,575,275)
sequence
NNTTCAATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTGTTTCCCAAAAATATTTCATGTGTCTGAGTGTTTTGCCT
GGATGTGTGTTTATATACCACAAGCATGTGGGGGCCCTGCAGGCCAGATT
CCCCTGGATCTGAAGTTACAGATGGTGGCGAGCCATTATGTGCGTGTTGG
CATTGAACCCAGGTTCTCTGCAAGAGCAGCCAACAATCTTAACCATGGAA
CCCGTCTCTCTAGCCCCGGGAATCCTTTCCGATGGAACTCTGGCTTCCTT
TCCTGGCCAAGAGTCCATGGTCCTTTCTCCAACCCACAGGCTTGTGCTGA
GGGAGAGTCTAGAAGTTATAGCTTCACTTGCTGCTTGGGATTCTGCTTCT
TGTCTCAGGCGGNACCTACTCAGGGTACCGCCAGCCGGGGACTGACCATC
ATCACAGAACACACCCTAGAGGGTGAGCACAGCAGCGTGTGTGGCCTTGG
CTAGACCTGGTTTTAACCGGGGCCATACAACTGCTGAGTATGAACTTGAA
GCTCATGATGGACCGTTTGTATGACCCTGAAGTACTTCTTCTCCGGAACA
CTGGATTTCATGTTTTTCATCCAACTGCCAGGGGTTAACGATATTAATAT
TTGGGGTCTTTTACCAATTTTGGGTGGTGATACTTTCCCTATTCTTATTC
CCGCCCTCCTTGGATCCTTTTTCTTCGTTTTTCCCACACAACTTCCTAAT
CTACTCTTCCTCTGTTTTTTTCCTTTCN

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGGAGAGGCAGAATTAAATTCTT
TACCTTGTTTTTTAAAACCTTGAAGTTTTACTAAGTTGGTGTAGCACTGG
AATTCAGCAACCACCCTGGAAGCTGAGCCTCTCCTACTGGCATATTCATG
AACGTCTTTCTACTAAACCTCTCTTTGTGCTACAGGGAGCTTATTTGGCT
CTGCTAACTTACAAGGAACAGCCTCCCTTCTAAATGGGGTTAGTGTGGAT
TAGTTCAGGGAACCTGAGCCAGATCTTGTTTGCATTGGATGGCTGAAGAA
AGGATTTGGGTAGGGGGAAGTGTTGCGGATTATGCAAATCACAGGCTGAT
ATGTAGGCTGGAAGCTCTTAGGGACTAAAAAGGCAGGTTTTCCCTATCCA
CTTACCAACTGGTCAGTGATCTAGTTCACATTTCTGGAATTTCAGGGTAG
ACGGTTTGGACAGATGCAGCGAAAATGTTAGTAAGCATCCATGAACATGT
GATGTTTGTCCTCTGGGTTATTAAAGTCAGATCCCTTATAACTCCCCCCT
GGTATGTTAATAGCGCTCTTGGTTCTACTTGAATTTTGCCATGTCCCCTT
TTCTTTCTCTCTGTCATTTTTATTTCTGTTGCAAATGACAACAATTGATA
ACTCTCATTCCTTTGCTATTCCTCACCCCCTTTTCCGGAATATGCTGATT
CTATTGTTATACTCCCTCTCCCCTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_i11.b1 MSMg01no347_i11.b1 CHROMAT_FILE:
MSMg01no347_i11.b1 PHD_FILE: MSMg01no347_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:32 2005
         (422 letters)



>mm_chr6_53733831_53734652
          Length = 822

 Score =  772 bits (399), Expect = 0.0
 Identities = 416/422 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttcatgtgtctgagtgttttgcctggatgtgtgtttatataccacaagcatgtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 atatttcatgtgtctgagtgttttgcctggatgtgtgtttatataccacaagcatgtggg 758

                                                                       
Query: 61  ggccctgcaggccagattcccctggatctgaagttacagatggtggcgagccattatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggccctgcaggccagattcccctggatctgaagttacagatggtggcgagccattatgtg 698

                                                                       
Query: 121 cgtgttggcattgaacccaggttctctgcaagagcagccaacaatcttaaccatggaacc 180
            |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 697 ggtgttggcattgaacccaggttctctgcaagagcagccgacgatcttaaccatggaacc 638

                                                                       
Query: 181 cgtctctctagccccgggaatcctttccgatggaactctggcttcctttcctggccaaga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 637 tgtctctctagccccgggaatcctttccgatggaactctggcttcctttcctggccagga 578

                                                                       
Query: 241 gtccatggtcctttctccaacccacaggcttgtgctgagggagagtctagaagttatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtccatggtcctttctccaacccacaggcttgtgctgagggagagtctagaagttatagc 518

                                                                       
Query: 301 ttcacttgctgcttgggattctgcttcttgtctcaggcggnacctactcagggtaccgcc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 517 ttcacttgctgcttgggattctgcttcttgtctcaggcggtacctactcagggtaccgcc 458

                                                                       
Query: 361 agccggggactgaccatcatcacagaacacaccctagagggtgagcacagcagcgtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agccggggactgaccatcatcacagaacacaccctagagggtgagcacagcagcgtgtgt 398

             
Query: 421 gg 422
           ||
Sbjct: 397 gg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_i11.g1 MSMg01no347_i11.g1 CHROMAT_FILE:
MSMg01no347_i11.g1 PHD_FILE: MSMg01no347_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:32 2005
         (450 letters)



>mm_chr6_53574626_53575475
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaggagaggcagaattaaattctttaccttgttttttaaaaccttgaagttttactaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agaaggagaggcagaattaaattctttaccttgctttttaaaaccttgaagttttactaa 260

                                                                       
Query: 61  gttggtgtagcactggaattcagcaaccaccctggaagctgagcctctcctactggcata 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gttggtgtagcactggaattcagcaaccgccctggaagctgagcctctcctactggcata 320

                                                                       
Query: 121 ttcatgaacgtctttctactaaacctctctttgtgctacagggagcttatttggctctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatgaacgtctttctactaaacctctctttgtgctacagggagcttatttggctctgc 380

                                                                       
Query: 181 taacttacaaggaacagcctcccttctaaatggggttagtgtggattagttcagggaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacttacaaggaacagcctcccttctaaatggggttagtgtggattagttcagggaacc 440

                                                                       
Query: 241 tgagccagatcttgtttgcattggatggctgaagaaaggatttgggtagggggaagtgtt 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagccagatcttgttttcattggatggctgaagaaaggatttgggtagggggaagtgtt 500

                                                                       
Query: 301 gcggattatgcaaatcacaggctgatatgtaggctggaagctcttagggactaaaaaggc 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcggattatgcaaatcaccggctgatatgtaggctggaagctcttagggactaaaaaggc 560

                                                                       
Query: 361 aggttttccctatccacttaccaactggtcagtgatctagttcacatttctggaatttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggttttccctatccacttaccaactggtcagtgatctagttcacatttctggaatttca 620

                                         
Query: 421 gggtagacggtttggacagatgcagcgaaa 450
           |||||||||| |||||||||||||||||||
Sbjct: 621 gggtagacggcttggacagatgcagcgaaa 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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