NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGGTTCTTTGGTTAGCAAACACCATAGAAGGCAGATTCTATG
GTAAAAATCTGTGCCTAGATATGGCTAATGTACAAAGCTATGAGCTCCTG
CTGTGTTTGGGTCTGTGTTTGCTGTAGTAATATTTAACAATATTAACTTG
TAGATTCATCTGTATATTCAACCGTCTGAGATAGGTATCAAAATTCACAC
TGTAACAGAAGCAGCTCAGCTGTAGAACATGAGTGACTTGCCTTGGTTCT
CAATCTAAACAATTTCAAGGCCTAAATGTCTTCCAAAGCCCAGGTAATAG
AGGATGAAAGTGTAAAAGGCAAAGGGACTAACTGCAAACACTGTCTGAGT
CCATTTGGCTGTGCTTTAGTGTAACTGGACAGAATTCTCAGACTAACTCA
CCCCAGCTCCATCTTCTGCTGAAGTGACAGCCAGCCCTGTGGTAGTTCAC
ACTTTGTTTAGACCTCACAGTTATGGCTGAATAGCTCCCTGTGGACCTGA
AATTTANGGCTCCAAACAAAAGTTCAGGGCCTAACTTTTCCATTTTGTTA
CCTATTTTACTTTTCCCTGTCTGNCTGTCTGTCTGTCCAAGGNGGTAACG
AATGAAGTAAGTGTTCTTTTTGAAAGTTGGGTGCCTCTCTGTACAGCCTT
TTTTAAAACTCATATTTATAATATATTTTATAGTTTAAACTCCCAAATTC
TTTATGATTTTCTTTTCG

NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATTGGGAGGATACATCTA
CCTTCAGCAGTGGTGTAGGGGAAAGTGTACATAGCAGAGAAGGCTCGGTA
TCTCACACCATATACAAGAGTGACCTGGAGTGTTANTATCGGGGCGGGGG
GCCGGGCGAGGCAGGGGGGGGGGGGCTTCAAGATGTGGGGGGGNNNNCCA
CCAACCCAAAAAANNTTTTTTAAAAAAAAATTTTATAATTTCCCCCCCCA
AANNNNAAAAAAAATTTAAGNCCAAAAAAAAAAACNAAGGGGGGGAAAAT
TTTTTATAAAAACCCCCCCCCCGGAAAGAGGCCCCCCCGGAAATCTCCCT
TTTTATTAGAGACGCGGATCTCTTTTTTTTTAAAAAAAAATTTTNNNNNN
GTTGTGGGGGGTGGGGGGNNNNNNNNNNNNCNNNNNNNNNNNNAAAAAAC
AAAAAAGGAATTTTTTTTTNTTTCTGGGNCCCNNCNTNCTTTTTTTNNNN
CCCCCCCCCTCCTCTCTGCCCAAAAAAAAAAAATCAAACACCCCCCACAT
CATACTATTTTTATTCTCTTTTANTTTATAAATCCCACANAAACAATATA
ATACATCTATTCTTTTCCCCCTCCTCTTCTTCCCCTTCCTTCTTCTTCCA
TTCCCTCTCTTCCTCTCCCCCCACCCTATCTCTTAATTCCCCTTCCCCCC
TATATCTTTCCCCCCCCCCCCCTTTCCTTCTCTTCCCCCCTTTTCCCCCC
CTTCCCCCCCTTTCTTTTCCTTTTCAATATGTAGAATAT

Query= MSMg01no347_m17.b1 MSMg01no347_m17.b1 CHROMAT_FILE:
MSMg01no347_m17.b1 PHD_FILE: MSMg01no347_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:53 2005
         (498 letters)



>mm_chr6_33917779_33918681
          Length = 903

 Score =  884 bits (457), Expect = 0.0
 Identities = 487/499 (97%), Gaps = 5/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggttctttggttagcaaacaccatagaaggcagattctatggtaaaaatct 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 703 gaattctttggttctttggttagcaaacaccatagaaggcagaatctatggtaaaaatct 644

                                                                       
Query: 65  gtgcctagatatggctaatgtacaaagctatgagctcctgctgtgtttgggtctgtgttt 124
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 643 gtgcctagatatggctaatgtacgaagctatgagctcctgctgtgtttgggtctgtattt 584

                                                                       
Query: 125 gctgtagtaatatttaacaatattaacttgtagattcatctgtatattcaaccgtctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gctgtagtaatatttaacaatattaacttgtagattcatctgtatattcaaccgtctgag 524

                                                                       
Query: 185 ataggtatcaaaattcacactgta-acagaagcagctcagctgtagaacatgagtgactt 243
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 523 atgggtatcaaaattcacactgtacacagaagcagctcagctgtagaacatgagtgactt 464

                                                                       
Query: 244 gccttggttctcaatctaaacaatttcaaggcctaaatgtcttccaaagcccaggtaata 303
           |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gccttggttctcaaactaaaggatttcaaggcctaaatgtcttccaaagcccaggtaata 404

                                                                       
Query: 304 gaggatgaaagtgtaaaaggcaaagggactaactgcaaacactgtctgagtccatttggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaggatgaaagtgtaaaaggcaaagggactaactgcaaacactgtctgagtccatttggc 344

                                                                       
Query: 364 tgtgctttagtgtaactggacagaattctcagactaactcaccccagctccatcttctgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtgctttagtgtaactggacagaattctcagactaactcaccccagctccatcttctgc 284

                                                                       
Query: 424 tgaagtgacagccagccctgtggtagttcacactttgtttag----acctcacagttatg 479
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 283 tgaagtgacagccagccctgtggtagttcacactttgtttagacaaacctcacagttatg 224

                              
Query: 480 gctgaatagctccctgtgg 498
           |||||||||||||||||||
Sbjct: 223 gctgaatagctccctgtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 903
Length adjustment: 10
Effective length of query: 488
Effective length of database: 893
Effective search space:   435784
Effective search space used:   435784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)