Query= MSMg01no348_e03.b1 MSMg01no348_e03.b1 CHROMAT_FILE:
MSMg01no348_e03.b1 PHD_FILE: MSMg01no348_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
(519 letters)
>mm_chr6_120926825_120927744
Length = 920
Score = 775 bits (401), Expect = 0.0
Identities = 506/585 (86%), Gaps = 71/585 (12%)
Strand = Plus / Plus
Query: 5 gaattctgaacttatccatcactggcttccgggtgctcattagcctctc--gttaatgaa 62
||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 193 gaattctgaacgcatccatcactggcttccgggtgctcattagcctcccttgttaatgaa 252
Query: 63 atgcgctgtcagctgcttagcactgctcaaatctgaagggaggccatg----------ca 112
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 atgcgctgtcagctgcttagcactgctcaaatctgaagggaggccatggagacttctgca 312
Query: 113 ctcatcttaaattctctgtccctccacctcagtgtgccctcggattgtctagacaggctg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcatcttaaattctctgtccctccacctcagtgtgccctcggattgtctagacaggctg 372
Query: 173 ggagggaccgtgtctgacgtcccaagagaggggctggagtgcagcctgacctcgcccagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggagggaccgtgtctgacgtcccaagagaggggctggagtgcagcctgacctcgcccagg 432
Query: 233 ctatgttattaggatggctgtgctggacatgattcagggtgatgaatacgtccctctgtg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatgttattaggatggctgtgctggacatgattcagggtgatgaatacgtccctctgtg 492
Query: 293 atgaagacaatgaaggtccatggctgttagtgccacgccagctctttttatgacagctca 352
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 493 atgaagacaatgaaggtccatggctgttagtgccacgccagctcgttttatgacagctca 552
Query: 353 gaggctgtgagagccaaaaggtcagctccaccccccc--accccacccccctctagtgac 410
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct: 553 gaggctgtgagagccaaaaggtcagctccacccccccccaccccaccccc-tctagtggc 611
Query: 411 tgtaagcataagcatttgc----------------------------------------- 429
|||||||||||||||||||
Sbjct: 612 tgtaagcataagcatttgcttttttttttttttttttaaagatttatttattattatatg 671
Query: 430 ---------------aagaggcctttctgtttgcttctgcacagcagcctccctaactgc 474
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 672 taagtacactattgcaagaggcctttctgtttgtttctgcacagcagcctccctaactgc 731
Query: 475 aggaaggatagagacagacccccaggagctagtagaaactttctt 519
|||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 732 aggaaggacagagacagacccacaggagctagtagaaactttctt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no348_e03.g1 MSMg01no348_e03.g1 CHROMAT_FILE:
MSMg01no348_e03.g1 PHD_FILE: MSMg01no348_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:29 2005
(244 letters)
>mm_chr6_121118559_121119202
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 tcactcaactattaactccttgggagtccagctgtacacgttatttccgtgtttctgact 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 tcactcaactattaactccttgggagtccagctgtacatgttatttccgtgtttctgact 252
Query: 61 tctgacacgtggagggagcgtgtggatatgttggttctttttaatttttaaatttattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctgacacgtggagggagcgtgtggatatgttggttctttttaatttttaaatttattat 192
Query: 121 tttatgtatacgggtgttttgcctgtatctgtcagcgcactgcatgcacacctggtgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tttatgtatacgggtgttttgcctgtatctgtcagcgcactgcatgcacacctggtgacc 132
Query: 181 aaagagtccaaaagagggagtctgctaccctgaactggagtaacaagaaagttgtgagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaagagtccaaaagagggagtctgctaccctgaactggagtaacaagaaagttgtgagct 72
Query: 241 gcca 244
||||
Sbjct: 71 gcca 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
