Query= MSMg01no349_a22.b1 MSMg01no349_a22.b1 CHROMAT_FILE:
MSMg01no349_a22.b1 PHD_FILE: MSMg01no349_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:34 2005
(564 letters)
>mm_chr6_120128371_120129334
Length = 964
Score = 1027 bits (531), Expect = 0.0
Identities = 555/565 (98%), Gaps = 4/565 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagaacctcctaagcaatgtagtaaggcctcctttcaaaagaaacaacaaaaa 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagaacctcctaagcgatgtagtaaggcctcctttcaaaagaaacaacaaaaa 263
Query: 64 atcgttgttgttgctgttgaaggcaagtgtggcactacaatcttataatcctactactga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcgttgttgttgctgttgaaggcaagtgtggcactacaatcttataatcctactactga 323
Query: 124 gctttaggccagcctgggctacatactgagctttaggccagcctgggctacaaagtacga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 gctttaggccagcctgggctacatactgagctttaggccagcctgggctacaaagtatga 383
Query: 184 tcctgtttcaaaaacaaacaaagaaacaagatcatttaaggcatatgggtttcatgccac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctgtttcaaaaacaaacaaagaaacaagatcatttaaggcatatgggtttcatgccac 443
Query: 244 acttacaaagttttcttcattctaagattaaaaaaaatattctcagagtacactggtact 303
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 acttacaaagttttcttcattctaagattaaaaaaaatattctcagagtgcactggtact 503
Query: 304 tttaagaatctgctggggggagatttttgagactcaacacctaaaagagaacaaggacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 tttaagaatctgctggggggagatttttgagactcaacacctaaaagagaacaagaacta 563
Query: 364 ttaataaagacaatggccatcttttgtttttttgtttttttt----atttgtttgtctgt 419
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 ttaataaagacaatggccatcttttgtttttttgttttttttttttatttgtttgtctgt 623
Query: 420 tttctgggacgtggtgtctctgtgtaacagtcctccctggctggcctggaactcactctg 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 tttctgggacgtggtgtctctgtgtaactgtcctccctggctggcctggaactcactctg 683
Query: 480 tagaccaggctggcctcgaactcacagagatctgcctgcctctgactcctgagtgctgtg 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 684 tagaccaggctggcctcgaactcacagagatctgcctgcctctgactcctgagtgctggg 743
Query: 540 attaaagggtactccatccatcagt 564
|||||||||||||||||||||||||
Sbjct: 744 attaaagggtactccatccatcagt 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_a22.g1 MSMg01no349_a22.g1 CHROMAT_FILE:
MSMg01no349_a22.g1 PHD_FILE: MSMg01no349_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:34 2005
(462 letters)
>mm_chr6_120303067_120303928
Length = 862
Score = 843 bits (436), Expect = 0.0
Identities = 454/462 (98%), Gaps = 4/462 (0%)
Strand = Plus / Minus
Query: 1 taggacggcaagagctacatagagagactctgtctcaaacaaaacaaaacaaacaaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 523 taggacggcaagagctacatagagagactctgtctcaaacaaaaca----aaacaaacaa 468
Query: 61 acaaacataacctctttttggaactaccagaactctttcagtgtgaatggaggagtccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 acaaacataacctctttttggaactaccagaactctttcagtgtgaatggaggagtccca 408
Query: 121 gtgatggtaggtcttgggtcatagggagtaaccaatatgtagataagagatggatttgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gtgatggtaggtcttgggtcatagggagtaaccaatatgtagataagagatggatttgcc 348
Query: 181 acacagccttcatccctcccagccatagctcccctcttgcagagtgtaagaattactctt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 347 acacagccttcatccctcccagccatagctcccctcttgcagagtgtaagaactactctt 288
Query: 241 ttgtttgtttggttggttggttttggtttttcgagacagggtttctctgtgtagccctgg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgtttggttggttggttggttttggtttttcgagacagggtttctctgtgtagccctgg 228
Query: 301 ctgtcctggaactcactctgtagaccatgctggccttgaactcagaaatctgcctgcctc 360
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 227 ctgtcctggaactcactctgtagaccaggctggccttgaactcagaaatccgcctgcctc 168
Query: 361 tgcctcccgagtgctgggattaaaggcacgtgccaccatgcccggcttactcttattttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgcctcccgagtgctgggattaaaggcacgtgccaccatgcccggcttactcttattttt 108
Query: 421 taataacttatttattttgatgttttgcttgcatgtatgtgt 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 taataacttatttattttgatgttttgcttgcatgtatgtgt 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
