Query= MSMg01no349_c15.b1 MSMg01no349_c15.b1 CHROMAT_FILE:
MSMg01no349_c15.b1 PHD_FILE: MSMg01no349_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:41 2005
(704 letters)
>mm_chr6_15820193_15821296
Length = 1104
Score = 1284 bits (664), Expect = 0.0
Identities = 692/702 (98%), Gaps = 2/702 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtatacatttctcaattacctttaaatttactattcaattcctcttcccatgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagtatacatttctcaattacctttaaatttactattcaattcctcttcccatgg 262
Query: 65 ccatggtttctctctctctctctct--ttccctctctcctccacacctaaatgaaaacaa 122
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 ccatggtttctctctctctctctctctttccctctctcctccacacctaaatgaaaacaa 322
Query: 123 gcttaaaaatgtttggcccgggaaaagttaattttgataaatattttcatttaaaaggca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcttaaaaatgtttggcccgggaaaagttaattttgataaatattttcatttaaaaggca 382
Query: 183 tatactttcttaaggtccctttactgtcatcaatccagaagagagtttttttgtgtattt 242
||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct: 383 tatactttcttaaggtccctttactttcatcaatccagaagagaggtcttttgtgtattt 442
Query: 243 ggaaacatagtggaggtacccaggttatggctctctcttcaatatttaacaaagaaactt 302
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaaatatagtggaggtacccaggttatggctctctcttcaatatttaacaaagaaactt 502
Query: 303 gcaatttcttcataggcacatatttcaaatgattacagatgtgtaccccagagtggtctg 362
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcaatttcttcataggcacatatgtcaaatgattacagatgtgtaccccagagtggtctg 562
Query: 363 aaaaatttactttctgagtactaataaactatcacagaagaatacttcctatgcctagtg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaaaatttactttctgagtactaataaactatcacagaagaatacttcctatgcctagtg 622
Query: 423 tattagtacaactatctatgttgtacaaggtgacataatattggtcaaaagagattatgt 482
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 623 tagtagtacaactatctatgttgtacaaggtgacgtaatattggtcaaaagagattatgt 682
Query: 483 cttttccagaccaatgttcccaaaatggaagcaatttattatttttacctatttaaacat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttttccagaccaatgttcccaaaatggaagcaatttattatttttacctatttaaacat 742
Query: 543 ttcagtaagataatattttaatttatcaagtatgtggattacaaatcataattcatatga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcagtaagataatattttaatttatcaagtatgtggattacaaatcataattcatatga 802
Query: 603 tcaaaggttgcattttaatgtggaaaaactggtacttatttttaaattgtgtgtgtatgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcaaaggttgcattttaatgtggaaaaactggtacttatttttaaattgtgtgtgtatgt 862
Query: 663 atgtgcatgcactcccacacatggcatggtgtctatgtgaaa 704
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 atgtgcatgcactcccacacatggcatggtgtctatgtgaaa 904
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no349_c15.g1 MSMg01no349_c15.g1 CHROMAT_FILE:
MSMg01no349_c15.g1 PHD_FILE: MSMg01no349_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:42 2005
(486 letters)
>mm_chr6_15915890_15916775
Length = 886
Score = 917 bits (474), Expect = 0.0
Identities = 483/486 (99%)
Strand = Plus / Minus
Query: 1 tctagatatctgcaatttaagaaaaacagtattaagccgtctaacatcgcatgctgatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctagatatctgcaatttaagaaaaacagtattaagccgtctaacatcgcatgctgatcc 627
Query: 61 taaattactaagaccatcacagcatttgcccagcagtcattctttgagcaaactcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaattactaagaccatcacagcatttgcccagcagtcattctttgagcaaactcatttt 567
Query: 121 aaagccagaatttaagcaggaaattgaatctgtaaaaggaagaatcaatgaagcattgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaagccagaatttaagcaggaaattgaatctgtaaaaggaagaatcaatgaagcattgtg 507
Query: 181 tcttgtaatgctttcagatgaatgagtaagtattcaaggataaggagtcatcaaatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcttgtaatgctttcagatgaatgagtaagtattcaaggataaggagtcatcaaatttgt 447
Query: 241 agaaataatgggtgagagcgaagggtctacaaagaaactcacaaatgtcttcttagcatt 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agaaataatgggtgagagagaagggtctacaaagaaactcacaaatgtcttcttagcatt 387
Query: 301 attttatcactaatatagttctcaaaacaagtgaccaaaacgcctagcatgtcaggcacc 360
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actttatctctaatatagttctcaaaacaagtgaccaaaacgcctagcatgtcaggcacc 327
Query: 361 catgtctgaagaatacataatttgtaagttctactccaatactaaacactaacttccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 catgtctgaagaatacataatttgtaagttctactccaatactaaacactaacttccatg 267
Query: 421 ttaggggcacattataaatataatagatatggtagtttggacttgttactgaaaatcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaggggcacattataaatataatagatatggtagtttggacttgttactgaaaatcttt 207
Query: 481 tcttgt 486
||||||
Sbjct: 206 tcttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
