BAC Information

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BAC

Clone NameMSMg01-350L02
Chromosome6 (Build37)
Map Location 120,487,287 - 120,628,185
singlet/doubletdoublet
Overlap gene1700072O05Rik, Cecr2
Upstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5
Downstream geneSlc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L02.T7 (MSMg01no350_l02.b1)MSMg01-350L02.TJ (MSMg01no350_l02.g1)
ACCAG462244AG462245
length778817
length of high quality
(start - end)
148 (76 - 223)306 (85 - 390)
definitionCHROMAT_FILE: MSMg01no350_l02.b1 PHD_FILE: MSMg01no350_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005CHROMAT_FILE: MSMg01no350_l02.g1 PHD_FILE: MSMg01no350_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,628,042 - 120,628,185)(120,487,287 - 120,487,590)
sequence
TTTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTCCCTTTGACAACATTGTGGACGGAGAACTGACTCTA
GAAAAGTGAACACTGCCCTCTACACATAAGATATGGCATATGGTAGGTAG
GGCAACCAAAATAAATTTTAAAAAGTAATAACAAAATGGAGTAAGAATAC
ACTGAATGCTAGCATCTCACGAGGCGGTCAGGTGCATCTCTAACGTCCAA
GCCAGTTGAGTTCGCTAGACCTCCCGAGGAAGCATAGTCTCAAAAACAAA
ACGGGAAGTAACAAGTTGTTTGCCAACACGGATTATCCCCGCACTTGAGA
AACGAAGGTAGGAAGATCGCTGTAAATTTAGGCCACTTTGGTCTACACAG
CAGTTCAAACTAGCCAGGACTACATAGCAAACTTGTTTCAAAAATATGGG
GCTAAAGATGGCTCAATAGTTAAGAGTACTGATAATTCTTCCAGAGGACC
TGGGTTCAATTACCACCTAATAGTTCACAATTGTCTGCTACTCCAGTTCC
AAGATATCTGATCCCACCTTTATATACCCGCCTGCCCTGCCCCACCCGCT
ATACTCCTTCCATTCTATATCAATTCTTTTATACTTTATAGCTATACACT
AATACTATTTTTTTTACTGAGTCCTCATCCACCGCACTTACTTTTTACCC
TCCGTTCCTTTCCCTCCTTCCTATTCCTCCCCTTTGCCCCTCCCGCTCCC
GTATACTTCCCCCCATATTTTCCGTCCG
NNTTTTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGCATT
GTTTCAACCCCGTGCCTCTCCCCCTGAAAGTCATCTCCAATGGTGGGCAG
CATTCACAGTGACTTCATCAAAATTGAGAGTCGACAGAGACCATGCTGTA
AATATAGATTCTGGATTAGGAACCTTAGACCAAGATGAATTACTACAAAC
GAGGAAAGACTTTAAAAAGGATTCACTGTTGCCTGGCCAGACATGGCTGC
CAGGATTGTATAGTGTCACACTGTCAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATNCTATTTC
CTGTGCCTCTATCCCTCTTAATGATGGCCCCCCTTTTACTGATTATGATT
CTTCTTTCCCCCTGATCTTATTATCATACGACTAATATATCTATTCCTTT
TCTTTCTCGTCCCTACATCTCCTCCTCTCTTTATTTGTTCCCCAACCCTT
CTCATTCCTTAATTTCACTCATATTACTTTTTTCACTTTTTTCCTTTTTT
TTTTAACTATCTTTTTTTTTTTTCTATTTCTCAGACTCTTTTATTACGAT
ATTTTATTCCTTTTTCCTCTCCTTTCTTACTTTTTCTCTCTTCTTTTCTT
CTCTCCCACTCCTCCCTCCTATTATACATGGCGCAAATCTCCGCTCTCCC
TCTTCTTACCTTCTTCCACCCTCCATCTTTATTCTTCTTTTGTTTTACCC
CGCTCTCTCCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l02.b1 MSMg01no350_l02.b1 CHROMAT_FILE:
MSMg01no350_l02.b1 PHD_FILE: MSMg01no350_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (148 letters)



>mm_chr6_120627842_120628389
          Length = 548

 Score =  255 bits (132), Expect = 7e-73
 Identities = 141/144 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtggacggagaactgactctagaaaagtgaacactgccctctacacataagatatg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 cattgtggacggagaactgactctagaaaagtgaactctgccctctacacataagatatg 285

                                                                       
Query: 61  gcatatggtaggtagggcaaccaaaataaattttaaaaagtaataacaaaatggagtaag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 284 gcatatggtaggtagggcaaccaaaataaattttaaaaagtaataataaaatggagtaat 225

                                   
Query: 121 aatacactgaatgctagcatctca 144
           ||||||||||||||||||||||||
Sbjct: 224 aatacactgaatgctagcatctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no350_l02.g1 MSMg01no350_l02.g1 CHROMAT_FILE:
MSMg01no350_l02.g1 PHD_FILE: MSMg01no350_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:42 2005
         (306 letters)



>mm_chr6_120487087_120487792
          Length = 706

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagtcagcattgtttcaaccccgtgcctctccccctgaaagtcatctccaatggt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 caggacagtcagcattgtttcaaccccgtgcctcttcccctgaaagtcatctccaatggt 260

                                                                       
Query: 61  gggcagcattcacagtgacttcatcaaaattgagagtcgacagagaccatgctgtaaata 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gggcagcattcacagtgacttcatcaaaatcgagagtcgacagagaccatgctgtaaata 320

                                                                       
Query: 121 tagattctggattaggaaccttagaccaagatgaattactacaaacgaggaaagacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagattctggattaggaaccttagaccaagatgaattactacaaacgaggaaagacttta 380

                                                                       
Query: 181 aaaaggattcactgttgcctggccagacatggctgccaggattgtatagtgtcacactgt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaggattcactgttgcctggctagacatggctgccaggattgtatagtgtcacactgt 440

                                                                       
Query: 241 cagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 500

               
Query: 301 gaga 304
           ||||
Sbjct: 501 gaga 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)