BAC Information

Click to search

BAC

Clone NameMSMg01-350N01
Chromosome6 (Build37)
Map Location 126,269,717 - 126,270,077
singlet/doubletsinglet
Overlap genenone
Upstream geneScnn1a, Tnfrsf1a, Plekhg6, Cd9, Vwf, Tmem16b, Ntf3, LOC100043565
Downstream geneLOC667427, LOC100043567, Kcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350N01.T7 (MSMg01no350_n01.b1)MSMg01-350N01.TJ (MSMg01no350_n01.g1)
ACCAG462337AG462338
length731722
length of high quality
(start - end)
364 (60 - 423)500 (88 - 587)
definitionCHROMAT_FILE: MSMg01no350_n01.b1 PHD_FILE: MSMg01no350_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:52 2005CHROMAT_FILE: MSMg01no350_n01.g1 PHD_FILE: MSMg01no350_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTCTCCANTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTTATGTTTCAACTGACTTGGTTGTCTTTCTT
GTAAAGTATATTCTTGCAAATCTTGGTTCACTCCTTGTCAGTTCCCAATT
ACCCCAAGAGAGACCCAGGGAGAATTTCTTAGACTCCTCTCCATCTTGTT
CTATGTATTGAATCATCTCCATGCTATTGGGCTCACTCTTCAAAAATTCC
TCCTTGTGAAGTCGCTGAGTTCAACGGGGACAAGCACTGGCAGGATCCCT
TTGATTTTACTATGTGTTTGATTTTGACCTGATTTTTTTAGTTGTTTGGC
ATTCAGAAACTTTTTATTGTTGTGAAAATTTTCATATGTGCCCTACTTAG
GGCCACAACCCACAGTTTGAGAAACCCCCCCCCTGCCCCCTATGAAGATG
ACTCAGCAGTTAAGAGCACCTCTTGGTCTTCTACAGAACTGAAGTTTCAT
TCCCCATGTTTGTATAGGTCGTATTTAAGCTGTCTATAACTTCTTCTCCA
CTACACTTACTTTTTTCTTTTATCCTCCGGTTTTTTCACCTCCTTTTATT
ACACCGTTTTTTTGCTTCATTCTATCCTTTCCACTTATTCTTCCTCTTTG
CTCTTTGTTTTTACTCTTCTCCCCTTCTCTTTTTTTTTGTTTACTCTTTC
TCTTTATCCCTTCTCCTTCCTTCTTCTTTTG
NNTTAAAGTCGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCTGAGGAAT
ACCGAATGGCAGAGAAGCACCTGAACAAATGTTCAACATCCTTAATCATC
TGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAG
AATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTG
GAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACT
ACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCC
CAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGGAGGC
ATCATCCTGAGTGAGGTAACCCATTCTCAAAGAAACTCACACAACATGTA
CTTCCTGATAAGTGTAATTTACCCCACAACCTAGGATTCCCAACAATAAA
TAAACCCTTTGCTAATCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_n01.b1 MSMg01no350_n01.b1 CHROMAT_FILE:
MSMg01no350_n01.b1 PHD_FILE: MSMg01no350_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:52 2005
         (364 letters)



>mm_chr6_126269514_126270278
          Length = 765

 Score =  659 bits (341), Expect = 0.0
 Identities = 357/363 (98%), Gaps = 4/363 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttatgtttcaa--ctgacttggttgtctttcttgtaaagtatattcttgcaaa 61
           |||||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttatgta-caaaactgacttggttgtctttcttgtaaagtatattcttgcaaa 262

                                                                       
Query: 62  tcttggttcactccttgtcagttcccaattaccccaagagagacccagggagaatttctt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcttggttcactccttgtcagttcccaattaccccaagagagacccagggagaatttctt 322

                                                                       
Query: 122 agactcctctccatcttgttctatgtattgaatcatctccatgctattgggctcactctt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agactcctctccatcttgttctatgtattgaatcatctccatgctattgggctcactctt 382

                                                                       
Query: 182 caaaaattcctccttgtgaagtcgctgagttcaacggggacaagcactggcaggatccct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaaaattcctccttgtgaagtcgctgagttcaacggggacaagcactggcaggatccct 442

                                                                       
Query: 242 ttgattttactatgtgtttgattttgacctgatttttttagttgtttggcattcagaaac 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 ttgattttactatgtgtttgattttgacctgatttttt-agttgtttggcattcagaaac 501

                                                                       
Query: 302 tttttattgttgtgaaaattttcatatgtgccctacttagggccacaacccacagtttga 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 tttttattgttgtgaaaattttcatatgtgccctacttagggccacaacccaaagtttga 561

              
Query: 362 gaa 364
           |||
Sbjct: 562 gaa 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space:   268380
Effective search space used:   268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)