BAC Information

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BAC

Clone NameMSMg01-351F15
Chromosome6 (Build37)
Map Location 81,330,645 - 81,331,166
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043390, LOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351F15.T7 (MSMg01no351_f15.b1)MSMg01-351F15.TJ (MSMg01no351_f15.g1)
ACCAG462744AG462745
length726728
length of high quality
(start - end)		525 (55 - 579)492 (86 - 577)
definitionCHROMAT_FILE: MSMg01no351_f15.b1 PHD_FILE: MSMg01no351_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:34 2005CHROMAT_FILE: MSMg01no351_f15.g1 PHD_FILE: MSMg01no351_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTCTCTGTAATAGAGTTATCACATTTCTGTGCTGAC
ATGTGGGGTGCTTTCGTGTAGTTCCTGGATTTACAGGTACATCATTCCAT
GACTTGATCATCAGATCCTACTGAGCTTCTCTCTCCATCTTTAAAAGAAA
GTGACTGATGAGCAGATCTTGAACAAAAGCAACTGCAGTGGAATCATACA
ACAAAATAAAACAGAAAAATGATTTGAGAGAAAAACATTGAGATTAAAAT
CATCTCTGTGTGTACTTAAAAGTAGAAACATACACTGTGTGAACAAAGAT
CTGTTACCTCAGACATGACTGGCCAAAGAAACAGTGCCACCAAAGTTTAG
CTTTAGTTTAGTGAATCAGTAAATTGGGAGTTTCTAATGAGATCATGGGA
AACTTCTCAGTGGCTATCATTGAGCCAATCATTGAGGAAAATTCTCACCA
GCCCCAGTAACTGTTAACCACCTGTGAATTCTCTGCGAGTATACCACTAA
TGGTCTCCATTCCATTTGGGATTACAGCCACTGAGACTTCAAAAAGAAAG
ATGCTGTGTCATATCCGGAGGCCATCCTTTTACATACACTCATATCCACA
CATACNAAGACCATGTCCCAACCCAATTGAAAGAGATATTCTTCTTCATA
AGTGAAGAAAATCTGCAGTATATCCG

NNNNCCCTCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAACAATCACCCAT
TGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCA
TCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTATCCTCTAAACG
CTGACACCATTGCATACACTAGCAAGCATTTGCTGAAAGGACCCTGATAC
AGCTGTCTCTTGTGAGAATAGGCCGGGGCCTAGCAAACACAGAAGTGGAT
GCTCACAGCCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGTTA
GAGAAAGTAACCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACA
ACATTATGACCTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCATATG
TATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGA
CATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGT
GGGAATGGGTGGGTAGGGGAGGAGGGAANGGTTNNNNTNNNNNNTNNNNT
TTTNTTTTTTTTTNTTNTNTTTTTTTNTTTTTTTNNTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTNTTTNNTTTTTTTTTTTNTTTTTNNN
TTTTTTTTTTTNNTTTTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_f15.b1 MSMg01no351_f15.b1 CHROMAT_FILE:
MSMg01no351_f15.b1 PHD_FILE: MSMg01no351_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:34 2005
         (525 letters)



>mm_chr6_81330441_81331366
          Length = 926

 Score =  955 bits (494), Expect = 0.0
 Identities = 515/522 (98%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctctgt-aatagagttatcacatttctgtgctgacatgtggggtgctttcgt 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcttctctgagaatagagttatcacatttctgtgctgacatgtggggtgctgtcgt 264

                                                                       
Query: 64  gtagttcctggatttacaggtacatcattccatgacttgatcatcagatcctactgagct 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 gtagttcctggatttacaggtacatcattccatgacttgaccatcagatcctactgagct 324

                                                                       
Query: 124 tctctctccatctttaaaagaaagtgactgatgagcagatcttgaacaaaagcaactgca 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 tctctctccatctttaaaagaaagtgactgacgagcagatcttgaacaaaagcaactgca 384

                                                                       
Query: 184 gtggaatcatacaacaaaataaaacagaaaaatgatttgagagaaaaacattgagattaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggaatcatacaacaaaataaaacagaaaaatgatttgagagaaaaacattgagattaa 444

                                                                       
Query: 244 aatcatctctgtgtgtacttaaaagtagaaacatacactgtgtgaacaaagatctgttac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcatctctgtgtgtacttaaaagtagaaacatacactgtgtgaacaaagatctgttac 504

                                                                       
Query: 304 ctcagacatgactggccaaagaaacagtgccaccaaagtttagctttagtttagtgaatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcagacatgactggccaaagaaacagtgccaccaaagtttagctttagtttagtgaatc 564

                                                                       
Query: 364 agtaaattgggagtttctaatgagatcatgggaaacttctcagtggctatcattgagcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaaattgggagtttctaatgagatcatgggaaacttctcagtggctatcattgagcca 624

                                                                       
Query: 424 atcattgaggaaaattctcaccagccccagtaactgttaaccacctgtgaattctctgcg 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 625 atcattgaggaaaattctcaccagccccagtaactgttaaccacctgtgaattcgctgca 684

                                                     
Query: 484 agtataccactaatggtctccattccatttgggattacagcc 525
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agtataccactaatggtctccattccatttgggattacagcc 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 926
Length adjustment: 10
Effective length of query: 515
Effective length of database: 916
Effective search space:   471740
Effective search space used:   471740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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