BAC Information

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BAC

Clone NameMSMg01-351F23
Chromosome6 (Build37)
Map Location 50,710,097 - 50,710,503
singlet/doubletsinglet
Overlap genenone
Upstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351F23.T7 (MSMg01no351_f23.b1)MSMg01-351F23.TJ (MSMg01no351_f23.g1)
ACCAG462760AG462761
length850761
length of high quality
(start - end)
45 (59 - 103)409 (85 - 493)
definitionCHROMAT_FILE: MSMg01no351_f23.b1 PHD_FILE: MSMg01no351_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:36 2005CHROMAT_FILE: MSMg01no351_f23.g1 PHD_FILE: MSMg01no351_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCAAAAATAAAAATTGGGGCGCTAAAAGACTACTATAGTGAGAAGAA
CGCGGAATTCTTTCTGAATATTTTCTCCTCTCTCCTCTCCTCTCCTCTCC
TCTCCACTCCACTCCACTCCACTCCACTCCATCTAACTCCACTCCACTCC
GCTCCACTCAACACCAGTCCTCACGAAGGGGGGAGGGAAATCGCAAATGG
AGTCAAAAAAGTTAAGGAAAGATAAAAAGCAATAAGAGAATATGATAGAA
AAAAAAGAAGGTGAAAGGAGAAGGAAAGGAGAAAAGAAGTAGAGGAAAAG
GAAAGAAGAGAGAAAAAAGAGAAGAGGAAATAGGAAAGGAAAGAGGAGGA
GAGAAGGAAACTAAGAAAAAGAGTTTGAACAGAAAAAGTGAAAAGAAAAA
GAAAGAGAGGAAAAAAGATAGAGTAAAAGAAGAAAAAAATAGAGAAAAAG
AGAAATAAATAAAAAACAGAATAGGAAGAAAAAAAAAAGAAAAAAGAAGA
AAAAAAGGGAAAAATAAAAAGAAGTTTGAAAAAAAAGAAAAAAAAAAGAA
ACGAAGAAAAAAAAAAAGAAAGAAGAAGAATAAAAAAAGAGAAAAGAAAA
AAGAAATACGAAAAAAAAAATGGAAAAATAAAAAGATAAAATAAAGAACC
GTAAAAAAAGCGATAAAAAAAGAAAAAAAAAAAAAAAGAAAAAAAAAAAA
CGGAAAAAAGAAAAAGAGAAAAGAAAAAAACAAATAAGAGAAGAAAGTGA
TAGAAAAACTAAGATAAAGAGAAAAAAGAAAAAAAAGAAAAAAGAAAAAA
AAAGAAAAAGATAAAGAAATTGAGAGAAGGAGTAAAGGAGAAATAAGACG

NNNNNNNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGAGTTTCCCACA
ATTCTGGGCTCGCAGCAGAAATTCTCACTAGTATCTTTTAAGAAACTGGA
AACACTGCTGAGTCCAATATTTGGTCTCCTGTAAACGCTCTGCAGTCCCC
AAATGGAGTCCAATACATTTCTGTACTATAGTCACGATTCAGCCAATCTT
TTTCTTTCAAATGAACCTGAAACCTGTATGAACAGCCAGATACTTCAGAC
ATAAGTGTCTCAGTCATTAAACAGAGTAGAGGGATTATTTAATTCATTGT
TTTAAGCTTTAATTTAAAATCAGTTCCCGGGATAAATTTGAATGTGTACT
TATCTCTGTTCCAGGCTGTGCTCATGGAACAGCCCTGTCCTGTGTGAGCC
AAGCCAGCCAGCACTCTCTCCATACGGAGCAAGGGAAGCAGGGGGGNTTC
CTTTGTGTTTGTGTATTGATTTTCCCGGGGCTCCGAGCCACAACGTGGAG
TTTTGCCCTGTAAATTTTAAACATAAAACCATGGGGGATTGTGTGGGCTT
ATCTCTATGAACCGATATAAAACCCCCCCCAGAAGCGAAAAATTATCCTA
TGGCCTTGCTTTGGACGGGGGGGAAACACACCCTTATTAAAGGATTTTTT
TAATTAAAGCTAAGTTGGGAAAAAAAAAATTCTTTTGGTCCAAGGCTTTG
TTTTCAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_f23.g1 MSMg01no351_f23.g1 CHROMAT_FILE:
MSMg01no351_f23.g1 PHD_FILE: MSMg01no351_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:36 2005
         (409 letters)



>mm_chr6_50709897_50710705
          Length = 809

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggagtttcccacaattctgggctcgcagcagaaattctcactagtatcttttaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggagtttcccacaattctgggctcgcagcagaaattctcactagtatcttttaagaa 260

                                                                       
Query: 61  actggaaacactgctgagtccaatatttggtctcctgtaaacgctctgcagtccccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggaaacactgctgagtccaatatttggtctcctgtaaacgctctgcagtccccaaat 320

                                                                       
Query: 121 ggagtccaatacatttctgtactatagtcacgattcagccaatctttttctttcaaatga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ggagtccaatacatttctgtactatagtcatgattcagccaatctttttctttcaaatga 380

                                                                       
Query: 181 acctgaaacctgtatgaacagccagatacttcagacataagtgtctcagtcattaaacag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 acctgaaacctgtatgaacagccagatacttcagacataagtgtcttagtcattaaacag 440

                                                                       
Query: 241 agtagagggattatttaattcattgttttaagctttaatttaaaatcagttcccgggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagagggattatttaattcattgttttaagctttaatttaaaatcagttcccgggata 500

                                                                       
Query: 301 aatttgaatgtgtacttatctctgttccaggctgtgctcatggaacagccctgtcctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttgaatgtgtacttatctctgttccaggctgtgctcatggaacagccctgtcctgtg 560

                                                          
Query: 361 tgagccaagccagccagcactctctccatacggagcaagggaagcag 407
           |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tgagccaagccagccagcactctctccatacgaagcaagggaagcag 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)