BAC Information

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BAC

Clone NameMSMg01-351O19
Chromosome6 (Build37)
Map Location 141,820,420 - 141,820,860
singlet/doubletsinglet
Overlap geneEG664913
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750
Downstream geneSlco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351O19.T7 (MSMg01no351_o19.b1)MSMg01-351O19.TJ (MSMg01no351_o19.g1)
ACCAG463178AG463179
length749757
length of high quality
(start - end)		485 (55 - 539)441 (87 - 527)
definitionCHROMAT_FILE: MSMg01no351_o19.b1 PHD_FILE: MSMg01no351_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:17 2005CHROMAT_FILE: MSMg01no351_o19.g1 PHD_FILE: MSMg01no351_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTGATCTTTCCACGACTTTTAACATGAAGGGGTGTT
GGAGTTTGTCAAATGCTTTCTCAGCATCTAACGAGAAGATCATGTGATTT
TTTTTGTTTTTGAGTTTGTTTATATAGTGGATTGCATTGATGTATTTTTG
TACATTAAACCATTGTCTCTGGGATGAAGCCTACTTGGTCATGATGGATG
ATTGTTTTGATGTGTTCTTGGATTTGGTTTGTGAGGATTTTATTGAGTAT
TTTTGCATCTATATTCATAAGGCATATTGTTCTGAAGTTCTCTCTTTTTT
GTTGGATCTTTGAGTGGTTTATGTATCAGAGTAATTGTGGCTTCATAGAA
TGAATTGGGTAGAGTACCTTCCATTTCTATTTTGTGGAATAGTTTGAGTA
GAGTTGAAATTAGGTTTACTTTGAAAGTCTGATAGAACTCTGCACTAAAC
CCATCTGGTCCTGGGCTTCTTTTGGTTGGTAGACTATTAATGACTGCTTC
TATTTATGTAGGGGAGATGGCACTGTTAAGATCTTTAATCCCGATCCTGA
TTTTACTTTGGCAATCGGAATTTCCCTTAATAAGTTGGCCCCTTTCTCCA
CGGCTTCCCTTGGTTTTTTACACAATACCTTTTTGCTTGCACCCCCTCAA
CTATGTCTTATAATTCCCTCCCCTTACTCTGCCACTATTCCCCTCCCTN

TCTATTTNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGTGACGAACA
GATGGAGGGCATGGTTGTAGACCTCATTTCTATGTCCTCTGAAGCAGGCT
TATTTCTTCAAGTTTTTACAAAGTTCTCTTCTGTTATTTCCCTTGGAAAT
TCTGTTTTATTTTACTTAGTGTGAACTATCACTTTGCTGAAGTCTCAACA
GTTATTTCAGAAGCATGTTAGCTTCACTATGGTTAAATATTAAACTTTGA
TTCTAGTGTGCAGGCATGGGGGCAAGAGAAAGGAGAAATGTAAAGGCAGT
TTAAAATGTTGGCTTTGTAAATGAGAGATGAGTACACAGCTTGTCAAATG
CTAAGTATATTTGTGAAGTGCTAACTTTATCATATAAAAGTTGCCAGAAG
GCCTGTTTGGAAGACTGTTTTGTTTTGCCTGAAAAGATTCCGCAGCTTGT
GAAACAGGTATTCATTCACCTGCAGTGCCAAGGTTTTCCAATTTAGTGAC
TTATTCACTGACACCTTTGTTAAAACACTCACATGTTTGTACTTACGTTG
AACTGGGTTTTCATCTTAAACAATTACTACTTGTGGGTTAGGAAACTCCA
GAAACTAATTTAAAGGGTTGCCCAGGAAACATGATGACTTGGAAGGGGAT
CCTCAAAACCCTGGTAAAACAAGAAACATGGGGGGGCCAAAAATCCCCGA
AAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_o19.g1 MSMg01no351_o19.g1 CHROMAT_FILE:
MSMg01no351_o19.g1 PHD_FILE: MSMg01no351_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:17 2005
         (441 letters)



>mm_chr6_141820220_141821060
          Length = 841

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagtgacgaacagatggagggcatggttgtagacctcatttctatgtcctctgaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tacagtgacgaacagatggagggcatggttgtagacctcatttctatgtcctctgaagca 582

                                                                       
Query: 61  ggcttatttcttcaagtttttacaaagttctcttctgttatttcccttggaaattctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggcttatttcttcaagtttttacaaagttctcttctgttatttcccttggaaattctgtt 522

                                                                       
Query: 121 ttattttacttagtgtgaactatcactttgctgaagtctcaacagttatttcagaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttattttacttagtgtgaactatcactttgctgaagtctcaacagttatttcagaagcat 462

                                                                       
Query: 181 gttagcttcactatggttaaatattaaactttgattctagtgtgcaggcatgggggcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gttagcttcactatggttaaatattaaactttgattctagtgtgcaggcatgggggcaag 402

                                                                       
Query: 241 agaaaggagaaatgtaaaggcagtttaaaatgttggctttgtaaatgagagatgagtaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agaaaggagaaatgtaaaggcagtttaaaatgttggctttgtaaatgagagatgagtaca 342

                                                                       
Query: 301 cagcttgtcaaatgctaagtatatttgtgaagtgctaactttatcatataaaagttgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cagcttgtcaaatgctaagtatatttgtgaagtgctaactttatcatataaaagttgcca 282

                                                                       
Query: 361 gaaggcctgtttggaagactgttttgttttgcctgaaaagattccgcagcttgtgaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaggcctgtttggaagactgttttgttttgcctgaaaagattccgcagcttgtgaaaca 222

                                
Query: 421 ggtattcattcacctgcagtg 441
           |||||||||||||||||||||
Sbjct: 221 ggtattcattcacctgcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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