Query= MSMg01no352_d11.b1 MSMg01no352_d11.b1 CHROMAT_FILE:
MSMg01no352_d11.b1 PHD_FILE: MSMg01no352_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:40 2005
(577 letters)
>mm_chr6_25145487_25146464
Length = 978
Score = 619 bits (320), Expect = 0.0
Identities = 447/512 (87%), Gaps = 50/512 (9%)
Strand = Plus / Minus
Query: 5 gaattcatgcataattgccctgaagaaaaaaaaaatcatgtgaactgtgagggagaaagt 64
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 470 gaattcatgcagaattgccctgaag-aaaaaaaaatcatgtgaactgtgagggagaaagt 412
Query: 65 ggtaggctattgtaggtattttcaaacccagcccatctccctgctggggctcaatctcct 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggtaggctattgtaagtattttcaaacccagcccatctccctgctggggctcaatctcct 352
Query: 125 cacagctggagcaccatcccctcctgcctgccttctctgggtagctggtttaacatagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cacagctggagcaccatcccctcctgcctgccttctctgggtagctggtttaacatagat 292
Query: 185 aaatgatgaattatctatggaatctcactgtgagaaataaactgtgaggtgtaaccgcta 244
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 291 aaatcatgaattgtctatggaatcacactgtgagaaataaactgtgaggtgtaaccatta 232
Query: 245 gaggatatctaagag-gaaaaa-caaacactcaaagttcttaatcttaaaattccacata 302
||||||||||||||| |||||| |||| || ||| || | |||| || |
Sbjct: 231 gaggatatctaagagagaaaaaacaaaaac--aaa------aa-c--aaaa----ac-t- 189
Query: 303 caacccatg--tctaaaactgcactgcaaggaaggaaaatcgtggaatccacatacaacc 360
||| | ||| || || | ||||| |||||||||||||
Sbjct: 188 caa-----ggttcttaatct----t----------aaaat-------tccacatacaacc 155
Query: 361 caccatgtctaaaactgcactgcaaggaaaggaaattgtggaattacactttcctagttg 420
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct: 154 caccatgtctaaaactgcactgcaaggaaaggaaatcgtgcaattacactttcctaattg 95
Query: 421 gactcccaagaaggtatttgcttataaccgcagcatcaattttttt--ctcagtaatgta 478
||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 94 gactctcaagaaggtatttgcttataactgcagcatcaatttttttttctcagtaatgta 35
Query: 479 tgagtatttactttgtttgggattcatttttt 510
||||||||||||||||||||||||||||||||
Sbjct: 34 tgagtatttactttgtttgggattcatttttt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_d11.g1 MSMg01no352_d11.g1 CHROMAT_FILE:
MSMg01no352_d11.g1 PHD_FILE: MSMg01no352_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:40 2005
(417 letters)
>mm_chr6_25002622_25003437
Length = 816
Score = 799 bits (413), Expect = 0.0
Identities = 416/417 (99%), Gaps = 1/417 (0%)
Strand = Plus / Plus
Query: 1 ccacacactctgccccatgtgcatcttattatgtattaacctctgctcacaccatggtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacacactctgccccatgtgcatcttattatgtattaacctctgctcacaccatggtat 260
Query: 61 cgctttgttgtgtatcaattggaatgagctctgtgttgtgtctctgccttccagcagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctttgttgtgtatcaattggaatgagctctgtgttgtgtctctgccttccagcagtgt 320
Query: 121 ctgtgactatcattgatgcaaaagccaggcctctccttcatctttttccttgagtaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgactatcattgatgcaaaagccaggcctctccttcatctttttccttgagtaaaac 380
Query: 181 agaaaaaagtttgtatgagttcaaaatgatttcagaaaatatccagttataaagtatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaaaagtttgtatgagttcaaaatgatttcagaaaatatccagttataaagtatttc 440
Query: 241 tggaagctctgctttgatcttgtgataagggaccttgcaagttgggaaaaggtagcaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaagctctgctttgatcttgtgataagggaccttgcaagttgggaaaaggtagcaaga 500
Query: 301 aaagacagggatagttctagagagacagttattagttttgtggtttcctgtcctgtagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagacagggatagttctagagagacagttattagttttgtggtttcctgtcctgtagag 560
Query: 361 attacttccatctttatttagtgtgcttttttttgctctgtagcattccccatcaga 417
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 attacttccatctttatttagtgtgcttttttt-gctctgtagcattccccatcaga 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 816
Length adjustment: 9
Effective length of query: 408
Effective length of database: 807
Effective search space: 329256
Effective search space used: 329256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
