NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAGAAATAAATCCTTTCCAATAAAGAAAAGATGAAAAAGAATT
TTTCCAGTACCTCTTTTACTTTTGAGATTATAATACATACATATATGCAT
GTGATATATGTATGTGTGCATATGTATATATATGTGTGTATATATTATAT
ATATATCACATATTTCTTCATTTCCCTCTTCTGTTTCCTCCCTCAAAATC
CTCCAATCTATCCCCTCTTTCAAGTTTATGGCCTCTTTTTCTTTAATTGT
TACCTGTGTTTGTAATGTGTGTCTGTATAGTGTTACTTGTGTGAACTTGC
TTTCTTAGCTAACCGTTTGGTATTGGATATGCTCTTGCCTGGGGAAGACT
GTCTCTCCTGCTCTCAGCTTTCCTTAGCTGCCTGTAGTTCTTTATCTAGG
GTTGAAGCCTCATGAGATTTTTCTCTTCTTGTTATTAGCATGTCTGTTGG
TGTCATTCTTGTTTAAATCTTGTTGGTTAGAATTTATGTGTGTAGCTTAT
GTTTCTAAGAAAGACAATTCCACAACAGACTTCCTACTCTACTTGCACTT
AGAATCTTTCCACCCATCATCTGCAGGGATCTTCAAGTCTTAGGTGCAGG
AGTTGTACTGTAGATGTATTAGTTGTATTACACTGAAAAACTACATTTTG
AATGGGTGTCTGGTACAAAAAAAGTTCCTTGATTATGGATGAGAACTGCN

NNCCGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGACAGAACAACATACGGAC
AGAAGGGAGAAATGAGTTAGAAGGAAAGGCAAGCTTTATGCTGGTACAAA
ACAAATCATCATTATGATCATCGTCACCACCACTACCACCCAGTACTCTA
GGTTTACCATGACTGTGTTCCACAGTGCCAACAAAGAAACCATTTCTACA
TCAAGTCCTTGACTTTAAAACTTGAATCACTCAACATTCTGATCTTGATA
ACTGTTCTTCTAAATTATATCTCTGTACAAATGAATCATTAAAAGATAAT
TCAAACTTGAAACTACAGTTAAATACTTATAGAATTATTTTATTCTCTTA
GTACCACAAAACAATTCTAGTCCACTTTTTCAAAGCATGTATCCTGAACA
ATTAATTTCCACCCTAAAAGAGTGTAGTGTACTCTACTTTGTGAAAACAT
AGGTCCAAGAAAAAAGGTACTAACAAACTTCCCAAAGACAGTTCTATTTA
AAAATATTTAGATTTTTAAGTTTACAGAATATAGGGGAGTCAGTATTACC
TATGAGAATAATTACTCTGCTCCACAGAAATGCCACACTTGTGTGGGGGT
GGGGGTGGGTNNNNNNNNCNCNNCCCCCCNNNNCCCNTNTCCCTTCCCCC
TTTCTCCTCTGTCTTTCCTCCCCCTTCCCTTCCCTTTTTTCCTCCTCCCT
TCTTTTCCCTTCCTCG

Query= MSMg01no352_g13.g1 MSMg01no352_g13.g1 CHROMAT_FILE:
MSMg01no352_g13.g1 PHD_FILE: MSMg01no352_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:57 2005
         (457 letters)



>mm_chr6_8471893_8472755
          Length = 863

 Score =  853 bits (441), Expect = 0.0
 Identities = 455/463 (98%), Gaps = 6/463 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagacagaacaacatacggacagaagggagaaatgagttagaaggaaaggcaagcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgagacagaacaacatacggacagaagggagaaatgagttagaaggaaaggcaagcttta 604

                                                                       
Query: 61  tgctggtacaaaacaaatcatcattatgatcatcgt------caccaccactaccaccca 114
           ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||
Sbjct: 603 tgctggtacaaaacaaatcatcattatgatcatcgtcaccaccaccaccactaccaccca 544

                                                                       
Query: 115 gtactctaggtttaccatgactgtgttccacagtgccaacaaagaaaccatttctacatc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gtactctaggtttaccatgactgtgttccacagtgccaacaaagaaaccatttctacatc 484

                                                                       
Query: 175 aagtccttgactttaaaacttgaatcactcaacattctgatcttgataactgttcttcta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagtccttgactttaaaacttgaatcactcaacattctgatcttgataactgttcttcta 424

                                                                       
Query: 235 aattatatctctgtacaaatgaatcattaaaagataattcaaacttgaaactacagttaa 294
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 423 aattatatctctgtacaaatgaatcattaaaagatgattcaaacttgaaactacagttaa 364

                                                                       
Query: 295 atacttatagaattattttattctcttagtaccacaaaacaattctagtccactttttca 354
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atacttataaaattattttattctcttagtaccacaaaacaattctagtccactttttca 304

                                                                       
Query: 355 aagcatgtatcctgaacaattaatttccaccctaaaagagtgtagtgtactctactttgt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagcatgtatcctgaacaattaatttccaccctaaaagagtgtagtgtactctactttgt 244

                                                      
Query: 415 gaaaacataggtccaagaaaaaaggtactaacaaacttcccaa 457
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaaaacataggtccaagaaaaaaggtactaacaaacttcccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 863
Length adjustment: 10
Effective length of query: 447
Effective length of database: 853
Effective search space:   381291
Effective search space used:   381291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)