Query= MSMg01no353_c02.b1 MSMg01no353_c02.b1 CHROMAT_FILE:
MSMg01no353_c02.b1 PHD_FILE: MSMg01no353_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
(563 letters)
>mm_chr6_44897950_44898911
Length = 962
Score = 984 bits (509), Expect = 0.0
Identities = 547/561 (97%), Gaps = 6/561 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtcacattttc-c-atttagttgtttttcttggtcaaacatttttctaaagga 62
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtcacag---cactatttagttgtttttcttggtcaaacatttttctaaagga 262
Query: 63 gcagaaattcttaatctgtgaataggaactctctaataggactttgtctaaactacggaa 122
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct: 263 gcagaaattcttaatctgtgaataggaactctctaataggtctttgtttaaactacgaaa 322
Query: 123 agcatgaattagtccatctggagagaaatacagtgtgcctgtatgggtcactatatgcat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcatgaattagtccatctggagagaaatacagtgtgcctgtatgggtcactatatgcat 382
Query: 183 agttctaaaaaggatataccttacctcagtcttgaacaacacattttctgataactgctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agttctaaaaaggatataccttacctcagtcttgaacaacacattttctgataactgctt 442
Query: 243 taaatattttatgtactctttctcatcctaataatcctttgaacatttcacatcagtaaa 302
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 443 taaatattttatgtactctttctcaacctaataatccattgaacatttcacatcagtaaa 502
Query: 303 gctttcacagtttacacattacttcatataatttatgttcttaatgtaatgatcatggct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctttcacagtttacacattacttcatataatttatgttcttaatgtaatgatcatggct 562
Query: 363 tctggtggaaggtattattagaatcctaaattacaagagagaaatctgagacctcatgag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctggtggaaggtattattagaatcctaaattacaagagagaaatctgagacctcatgag 622
Query: 423 tccccatgtaaagtatcctaccgtcttctctctgcatttgctttagggagttcatgtgaa 482
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 623 tccccatgtaaagtatcctaccatcttctttctgcatttgctttagggagttcatgtgaa 682
Query: 483 gcccattccttacaagtaatgaaacaagaaatatttaataatgtattatgtctattgact 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 gcccattccttacaagtaatgaaacaagaaatatt-aataatgtattatgtctattgact 741
Query: 543 gagctaggcatgttgcataca 563
|||||||||||||||||||||
Sbjct: 742 gagctaggcatgttgcataca 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_c02.g1 MSMg01no353_c02.g1 CHROMAT_FILE:
MSMg01no353_c02.g1 PHD_FILE: MSMg01no353_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:54 2005
(474 letters)
>mm_chr6_45045046_45045919
Length = 874
Score = 795 bits (411), Expect = 0.0
Identities = 442/461 (95%), Gaps = 14/461 (3%)
Strand = Plus / Minus
Query: 28 tttgatggctgcttttgtgctatagttattgtgtatgattttgttgtttttctcggcaca 87
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 874 tttgatggctgcttttgtgctatagttattgtgtatgattttgttgtttttctcggcata 815
Query: 88 ttgacaaaggatgaaatgttatctatcagtgcacattaatttgaaaggcattctctttct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttgacaaaggatgaaatgttatctatcagtgcacattaatttgaaaggcattctctttct 755
Query: 148 tgtgagttttctagcgtcttaaaaaaacaaaaataaaaacaaaaaacaaaaaa------- 200
||||| ||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 754 tgtgaattttctagcatcttaaaaaaacaaaaacaaaaacaaaaaacaaaaaacaaaaaa 695
Query: 201 -------caaaaaacaaaaaacaggaacacatccaaacctccatgaaagggaattgaatt 253
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 694 caaaaaccaaaaaacaaaaaacaggaacacatccaaacctccatgaaaggaaattgaatt 635
Query: 254 gaaaccatgatactcagcaaattttttcaataggtttattctttcattgctgtgtaatta 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaaaccatgatactcagcaaattttttcaataggtttattctttcattgctgtgtaatta 575
Query: 314 acctcatattgagaattctattgcaaattctttttcaggagcaaattaaacatttggttt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acctcatattgagaattctattgcaaattctttttcaggagcaaattaaacatttggttt 515
Query: 374 tcagactatcatatttctgtgaaagtgagaattgtgtcactggaaaacagatgagctata 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcagactatcatatttctgtgaaagtgagaattgtgtcactggaaaacagatgagctata 455
Query: 434 ctgtgaggggttgtcaatgaagccatatttaccctgaagga 474
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgtgaggggttgtcaatgaagccatatttaccctgaagga 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
