BAC Information

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BAC

Clone NameMSMg01-353M08
Chromosome6 (Build37)
Map Location 110,780,876 - 110,781,213
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353M08.T7 (MSMg01no353_m08.b1)MSMg01-353M08.TJ (MSMg01no353_m08.g1)
ACCAG464567AG464568
length732756
length of high quality
(start - end)
384 (77 - 460)179 (83 - 261)
definitionCHROMAT_FILE: MSMg01no353_m08.b1 PHD_FILE: MSMg01no353_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:44 2005CHROMAT_FILE: MSMg01no353_m08.g1 PHD_FILE: MSMg01no353_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAGATTCCCCGGGACCTTTAACACCAATTATTAATTGT
GTCTAGTACCCTAGAACTAGTGATGAGTTCTCCTTTAGACAGATAGCTCG
TGGCTGATGACAGCTAGGTCACATGACCCACAACTATGTATTAGATATTA
CCTGCATCAGAAGAATTTAACTAAGCCTCAGTACCAGGCAGGAACAATCT
TCATTCAAGTTGTTAGATGAGAGAGCCAAAATAATATAGACTACTGTCAT
TGCCCCTAGTTGCTTCTCCAAGGATGACTGTTAAGTTCTTATTGCTGCCA
CTCACACACACCAGATACAGGATTCATAAGATTCAAGTTTGATCTAATTT
TAAAGCCCCCTTCTAGTGGTATCACTTCCATAGTACTGGAAAACACTATG
AAAGCAGCCTATAGAGAGAAGTAATATCTCTTTCCAGCTTGATGCCTATA
ACCCATAATAATGACAAGCTTTTGTATGATATCATTAAAGGGCAATTGTG
ACACTCCTATCTTGGTAGTGAAAGGTTTCTAATTGTATGTAAACCTATTA
TATCATATATGAATCATGCCCTGGTACTAGAAACCTAGACCACACCCTTG
GATTAGTGAAGTCCTGGATATTGGAATAGAACTTACTATTGCCCCTATCG
CTAAACCAGTGTCACTTCCTGAATGTTGTCCN
TTCTTTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATATTAAACCATCCC
TGCATCCCTGGAATGAAGCCTACTTGGTCATGATGGAATATCATTTTGAC
ATGTTCTTGGATTCAGTTTGTGAGGATTTTATTGAATATTTTTTCATTGA
TATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTCTGTGTTGTATCTTTG
TGTGGCCTAGGTATCTTCCACCAAATGCAGTCTATATTGCATATGCCAGC
GAAATATTGTTGAAAGGACCCTGACAAAGTTGTCTTGTGTGAGGCTATGC
CATTGCCTGGCAAATACAGAAGTGGATGTTCACAGTCTTATATTTGATGG
AATTCAGGGTCTCTAATGGAGTAGCTAGAGAAAGTACCCAATGAGCTGAA
CGTTTCTGCAACTCTATAGGCGCAATAACCATATGAACTATTCAATACCC
CTAGAGTTCATGTCTCTAGCTGCACTTGTACTAGAATACGTCCTATTTGC
CCTTTTTTGACATTACACTTCCCTTGCCCTTTGTTACTTTATCTTGCTTT
TGCCCTTGCCACCCGACTTTATTCCCATTTTTCCATTGCTTTCCTTCCCT
TCCCTTCCTTCTTACCCCTTTTTTCCCCTTTTTCTTCCCTTCCCCTTTTC
CCTTTCCCTTTCACCCTTTTTTCCATTCTTTATTTATTTCCCTTTTATCC
CCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_m08.b1 MSMg01no353_m08.b1 CHROMAT_FILE:
MSMg01no353_m08.b1 PHD_FILE: MSMg01no353_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:44 2005
         (384 letters)



>mm_chr6_110780876_110781659
          Length = 784

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctttaacaccaattattaattgtgtctagtaccctagaactagtgatgagttctccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctttaacaccaattattaattgtgtctagtaccctagaactagtgatgagttctccttt 279

                                                                       
Query: 61  agacagatagctcgtggctgatgacagctaggtcacatgacccacaactatgtattagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agacagatagctcgtggctgatgacagctaggtcacatgacccacaactatgtattagat 219

                                                                       
Query: 121 attacctgcatcagaagaatttaactaagcctcagtaccaggcaggaacaatcttcattc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atttcctgcatcagaagaatttaactaagcctcagtaccaggcaggaacaatcttcattc 159

                                                                       
Query: 181 aagttgttagatgagagagccaaaataatatagactactgtcattgcccctagttgcttc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aagttgttaggtgagagagccaaaataatatagactactgtcattgcccctagttgcttc 99

                                                                       
Query: 241 tccaaggatgactgttaagttcttattgctgccactcacacacaccagatacaggattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tccaaggatgactgttaagttcttattgctgccactcacacacaccagatacaggattca 39

                                                 
Query: 301 taagattcaagtttgatctaattttaaagcccccttct 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  taagattcaagtttgatctaattttaaagcccccttct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)