BAC Information

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BAC

Clone NameMSMg01-353N03
Chromosome6 (Build37)
Map Location 117,337,164 - 117,531,262
singlet/doubletdoublet
Overlap geneEG640142, LOC100043777, LOC621462
Upstream geneMarch8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneEG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353N03.T7 (MSMg01no353_n03.b1)MSMg01-353N03.TJ (MSMg01no353_n03.g1)
ACCAG464603AG464604
length759757
length of high quality
(start - end)		357 (51 - 407)471 (81 - 551)
definitionCHROMAT_FILE: MSMg01no353_n03.b1 PHD_FILE: MSMg01no353_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:48 2005CHROMAT_FILE: MSMg01no353_n03.g1 PHD_FILE: MSMg01no353_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,337,164 - 117,337,517)(117,530,792 - 117,531,262)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATAAAGCTGATTGACATCCTCCTCAAATTCCTTGACCTC
TTTGATAAAATATGTGATTGTTTTTTTCAAATTCTTGTTCTGGGGCTTAT
CTAGGTAGTTGTCATCAAAGAACAATTCTGTGGAGGCTTGTGGGCCAGTG
CTGGGGTTCTGTGATCAGAGATGGACCAGGTAAAGCTTGTAGATGAGATG
TTTGATTGGACTAGGCATGGATAGCACCAAATCATGGTTCCCGAGCTTGG
TCTGTGAGTATTGAGATGGCAGTGGGTGGGGGAAAGGGTGGGAGAGAAAA
GACCATTGGTCTGGGGCTAGGCCTTCAGTGGGAGGTGGGGGGGAGAGAGG
AAAGATTATAGTTAGGCCTTCANACGTGAATATGACACCTAGTTGTGTTC
ATGTTGGCATTATAGTTAATCAGATTCCACCCTCAACTGGCTCTTGATCC
AAAAGGTATCGTTGTTACTGTCCCTTGGATTTATTACTGTTATTGCGACC
CAATAATTCCGTGACTTTTCTTTGTGGGTTATTGACACGATTTTGTTCTG
GTGTCATCGATTTTCTTGTCACCATTTTTTTTTTTTCTTTATTTTTCGCT
TTATCACGTTTCATATATCGCCAATCTATATTCTTTCGGAATTTGTCCTT
CATATTTCCTTCTCCGTTTCCCTATTGCGCTATACGGTGGTTATCATATT
CGTTTTTTG

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTGGACCAAATTTTCT
GGATTGGCCTATTACATTGGTTTCAAATTAGATGGCTATCAAACCATTTT
GGCTCTCTGTTGAGTTGATTCAGCCAAGAAATTAGCTCACCTCCTGACTT
GAAAGATGAGAAGCAAGTAGTGGTTGCAGGCCAGAGGCTTGCAGAAATCT
TCCAAGGCCAGGTGGCTTTGGTAGCAGCGTTGAGATTTAGCTGTTAAAGG
CCTGCTCTCCAGGCAGTGGTACCCCTGAGAGGTGACTGGATTCAAGGAGG
ATGCCATCTGCATCAATGGGCAAATCTGGTGATGAGCTCATAGTGGAACT
GGCTCTTAGGAAGTGCAGCCAAGTTGAGGAAGTAGGTCACTGGAGATGGG
ACCTTTGAAAGGTTTTGTCTTTGTCCCCAGATACTTCTTTGTTTTTGTTC
TCTGCTCCCTGGATGCCTCCGGTGAGCAGCTTTCTTCCGTGTGCGTCTGC
CACGATGTTCTATGTCACCATAGGACTAATAACAATGGACTCATGGGCTG
CTGAGGCTGACACCATATACTCCACTAAACCTTTCCTACCTTAAGATGAA
TTTTTTTCCCGATATTTTTTTCCTCTACCTGGATGATACACCCTTGGAAT
GTACTCCGTTCCCTATGTGCCCCCACCCTTTGGCCTGAAAAAAATATCAC
ACTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_n03.b1 MSMg01no353_n03.b1 CHROMAT_FILE:
MSMg01no353_n03.b1 PHD_FILE: MSMg01no353_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:48 2005
         (357 letters)



>mm_chr6_117336961_117337717
          Length = 757

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaataaagctgattgacatcctcctcaaattccttgacctctttgataaaatat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaataaagctgattgacatcctcctcaaattccttgacctctttgataaaatat 263

                                                                       
Query: 64  gtgattgtttttttcaaattcttgttctggggcttatctaggtagttgtcatcaaagaac 123
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 264 gtgattgtttttttcaaattcttgttctggggctcatctaggtagctgtcatcaaagaac 323

                                                                       
Query: 124 aattctgtggaggcttgtgggccagtgctggggttctgtgatcagagatggaccaggtaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattctgtggaggcttgtgggccagtgctggggttctgtgatcagagatggaccaggtaa 383

                                                                       
Query: 184 agcttgtagatgagatgtttgattggactaggcatggatagcaccaaatcatggttcccg 243
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 agcttgtggatgagatgtttgattggaccaggcatggatagcaccaaatcatggttcccg 443

                                                                       
Query: 244 agcttggtctgtgagtattgagatggcagtgggtgggggaaagggtgggagagaaaagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcttggtctgtgagtattgagatggcagtgggtgggggaaagggtgggagagaaaagac 503

                                                                 
Query: 304 cattggtctggggctaggccttcagtgggaggtgggggggagagaggaaagatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cattggtctggggctaggccttcagtgggaggtgggggggagagaggaaagatt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_n03.g1 MSMg01no353_n03.g1 CHROMAT_FILE:
MSMg01no353_n03.g1 PHD_FILE: MSMg01no353_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:48 2005
         (471 letters)



>mm_chr6_117530751_117531621
          Length = 871

 Score =  872 bits (451), Expect = 0.0
 Identities = 466/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtggaccaaattttctggattggcctattacattggtttcaaattagatggctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cattgtggaccaaattttctggattggcctattacattggtttcaaattagatggctatc 453

                                                                       
Query: 61  aaaccattttggctctctgttgagttgattcagccaagaaattagctcacctcctgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaccattttggctctctgttgagttgattcagccaagaaattagctcacctcctgactt 393

                                                                       
Query: 121 gaaagatgagaagcaagtagtggttgcaggccagaggcttgcagaaatcttccaaggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaaagatgagaagcaagtagtggttgcaggccagaggcttgcagaaatcttccaaggcca 333

                                                                       
Query: 181 ggtggctttggtagcagcgttgagatttagctgttaaaggcctgctctccaggcagtggt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtggctttggtagcagcgttgagacttagctgttaaaggcctgctctccaggcagtggt 273

                                                                       
Query: 241 acccctgagaggtgactggattcaaggaggatgccatctgcatcaatgggcaaatctggt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 272 acccctgagaggtgactggattcaaggaggatgctatctgcatcaatgggcaaatctggt 213

                                                                       
Query: 301 gatgagctcatagtggaactggctcttaggaagtgcagccaagttgaggaagtaggtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gatgagctcatagtggaactggctcttaggaagtgcagccaagttgaggaagtaggtcac 153

                                                                       
Query: 361 tggagatgggacctttgaaaggttttgtctttgtccccagatacttctttgtttttgttc 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 152 tggagatgggacctttgaaaggttttgtctttatccccagatacttctttgtttttgttc 93

                                                              
Query: 421 tctgctccctggatgcctccggtgagcagctttcttccgtgtgcgtctgcc 471
           |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 92  tctgctccctggatgcctccggtgagtagctttcttccgtgtgtgtctgcc 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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