BAC Information

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BAC

Clone NameMSMg01-354A17
Chromosome6 (Build37)
Map Location 45,842,894 - 45,843,226
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354A17.T7 (MSMg01no354_a17.b1)MSMg01-354A17.TJ (MSMg01no354_a17.g1)
ACCAG464771AG464772
length759757
length of high quality
(start - end)		594 (48 - 641)582 (78 - 659)
definitionCHROMAT_FILE: MSMg01no354_a17.b1 PHD_FILE: MSMg01no354_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:05 2005CHROMAT_FILE: MSMg01no354_a17.g1 PHD_FILE: MSMg01no354_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTGACGAATACTGAATGGCTGACAATCACCTGAAAAAAT
GTTCAACATCCTTAATCATTAGGGAAATGCAAATCAAAACAACCTTGAAA
TTTCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGAGTATGTGGAGAAAGATGAACACTCCTCCATTGCTGGT
GGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGATTCTTC
ACAAAAATGGACATAGTACTACCAGAAGATCTAGAAATACCTCCCCTTGG
CATATACCCAGAAAAAGTTCCAACTGGTAATAAGAACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCTGAAGCCGGAAAGAACCCAGA
TGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGAGTAATATTTAGCTATTAAAAGCAATGAATTTATGAAATTCTTGGAAA
ATGAATGTTTTTGGAGGATATCATCCTTAGTGAGTAACCCAATCACAAAA
GAATTCATTAGATATGTACTTACTGGTAAGTGTATATTAGCCCAGAAACA
TAGAACACCAAAGATACCAATTGTAAAACACAAGAAAATCAAGAAGAGGG
AGACCAATGGGTGGATATTTCATTCCTCCCTANAATAGGAACAAAAACCC
ATGAAAGGA

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATTATACTAATAATTATT
AAGCTCCTTATAATAGAACTGCAATTAAGACCTTCTGTGATATGGGTACT
GCAGTTAGAACCCTGCTAGTCCTCATGCGTCATGAGTTAATTGTTTCTGA
AACAGAAAGCAGCCATTTACAACTTTGAATATACTCCTTAGAGCTGTAAA
ACCGTTAACGAAAGGTCCTAAACTGAAAATCAACAATTTATTGTAGGTGT
AAGGACAGAAGATAAAGTATTTACTGGGTTTATGTACATAAATATTCAAT
GTTAACTTTGACACAAAAATTATGGTTTTATACTCTCAATGAACCTGTGG
AGCTAGTGACAGATAATAAATGTCTAGCTAGATAACTAGTCTTAATAGAG
ACACATGTAATCATTGCTGTTGTAAACTTGTTCAATTTATAATTTGAATT
TATGTTTGAACATTTAGTGAACTTTTGTGAAAAAAGGATACTTAGAAAAT
ACATATGACCTACCCTTCTATAAAAAAGTACAAAAACAGGAGCAGTGATA
TTATGTAGCAGAAGAGAGCAAAACTAGGAGGATGAAGACAAAGAGCAACA
GCGCAGAGTGGACTAACTAAGAAATTAAGAGAGAGCATACAGTCTGATAG
GTTTCACCCCCTTTTACTTTCCCTCATAAATAAGGATTAGAAACTCTTTG
CTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_a17.g1 MSMg01no354_a17.g1 CHROMAT_FILE:
MSMg01no354_a17.g1 PHD_FILE: MSMg01no354_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:05 2005
         (582 letters)



>mm_chr6_45842245_45843226
          Length = 982

 Score =  613 bits (317), Expect = e-179
 Identities = 329/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 250 ggtttatgtacataaatattcaatgttaactttgacacaaaaattatggttttatactct 309
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 ggtttatgtatataaatagtcaatgttaactttgacacaaaaattatggttttatactct 923

                                                                       
Query: 310 caatgaacctgtggagctagtgacagataataaatgtctagctagataactagtcttaat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 caatgaacctgtggagctagtgacagataataaatgtctagctagataactagtcttaat 863

                                                                       
Query: 370 agagacacatgtaatcattgctgttgtaaacttgttcaatttataatttgaatttatgtt 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agagacacatgtaatcattgctgttgtaaacttgttcaatttataatttgaatttatgtt 803

                                                                       
Query: 430 tgaacatttagtgaacttttgtgaaaaaaggatacttagaaaatacatatgacctaccct 489
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 802 tgaacatttagtgaacttttgtgaaaaaaggatacttggaaaatacatatgacctaccct 743

                                                                       
Query: 490 tctataaaaaagtacaaaaacaggagcagtgatattatgtagcagaagagagcaaaacta 549
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 742 tctataaaaaagtacaaaaacaggagcagtgatattatgtagcaggagagagcaaaacta 683

                                            
Query: 550 ggaggatgaagacaaagagcaacagcgcagagt 582
           |||||||||||||||||||||||||||||||||
Sbjct: 682 ggaggatgaagacaaagagcaacagcgcagagt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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