Query= MSMg01no354_m05.b1 MSMg01no354_m05.b1 CHROMAT_FILE:
MSMg01no354_m05.b1 PHD_FILE: MSMg01no354_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:01 2005
(663 letters)
>mm_chr6_35734060_35735121
Length = 1062
Score = 1236 bits (639), Expect = 0.0
Identities = 657/663 (99%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 agttaagagcagatgcttaggtctgtagaacctagtctccacctctaatgcagcatgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaagagcagatgcttaggtctgtagaacctagtctccacctctaatgcagcatgcct 260
Query: 61 acattgtatctagcttatggaataagtgctctaatactaattcagttttagtccatgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattgtatctagcttatggaataagtgctctaatactaattcagttttagtccatgttc 320
Query: 121 accacatctttatttaaacctaccatgtatatcttagactgaataataggtacacctttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 accacatctttatttaaacctaccatgtatatcttagactgaataataggtacaccattc 380
Query: 181 ctgtactttctatactttcttgataatgtttctcacacattattagagattttaatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtactttctatactttcttgataatgtttctcacacattattagagattttaatgctt 440
Query: 241 aaaagttcttaaaattacacaccaggtcttaatttcatatattttaaatccattcagtgt 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagttcttaaaattacataccaggtcttaatttcatatattttaaatccattcagtgt 500
Query: 301 ttactatcttaacaatgtgacttttcacctacaatatcaatgttaacattttaaatttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttactatcttaacaatgtgacttttcacctacaatatcaatgttaacattttaaatttta 560
Query: 361 tctgtgcctgaatatgttttttttctaatcattttaatttatggattctatgtaattcac 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtgcctgaatatgttttttt-ctaatcattttaatttatggattctatgtaattcac 619
Query: 421 aatatgtttactacaagctgtctacagtttattttgaacctagttaaagtgagcgggctt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 aatatgtttactacaagctgtctacagtttattttgaacctagttaaagtgagcgggcct 679
Query: 481 tttataacatatttttccactaattttcacaactaattttatgtttatttgaatgaaact 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 tttataacatatttttccactaattttcacaactaattttatgcttatttgaatgaaact 739
Query: 541 aaaacttcttatatgccatgcttaaaagtatattttataccttcaaaatatctttccaag 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaacttcttatatgtcatgcttaaaagtatattttataccttcaaaatatctttccaag 799
Query: 601 atgtagaagaattaattttggcttttctttagatatataaattagacaatttattctctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgtagaagaattaattttggcttttctttagatatataaattagacaatttattctctg 859
Query: 661 ttt 663
|||
Sbjct: 860 ttt 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_m05.g1 MSMg01no354_m05.g1 CHROMAT_FILE:
MSMg01no354_m05.g1 PHD_FILE: MSMg01no354_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:01 2005
(574 letters)
>mm_chr6_35916399_35917373
Length = 975
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%), Gaps = 1/575 (0%)
Strand = Plus / Minus
Query: 1 cttaggagcagagagctttccagcaacaagagaaataatccatgagacagagcagttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cttaggagcagagagctttccagcaacaagagaaataatccatgagacagagcagttttc 716
Query: 61 taataagtgcttgctggataaatggtaagtaaatttgaatgttcaaaatattttaatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 taataagtgcttgctggataaatggtaagtaaatttgaatgttcaaaatattttaatata 656
Query: 121 attagtttgggaatca-tttttttctcttttctgcctaaagtgtcttttaaattttaatc 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 attagtttgggaatcattttttttctcttttctgcctaaagtgtcttttaaattttaatc 596
Query: 180 ataaattgaatactctgttcactgtctgaaatgaggcttctagttttatcctttttaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ataaattgaatactctgttcactgtctgaaatgaggcttctagttttatcctttttaaat 536
Query: 240 atttcatgtttataaaatatttcttgtcattagtataatcaatatttattcagcggcaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atttcatgtttataaaatatttcttgtcattagtataatcaatatttattcagcggcaca 476
Query: 300 tgtgcgaaggtctttggagggtctgggctgtgaagaatcagtcaatggaatgtgtttcta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtgcgaaggtctttggagggtctgggctgtgaagaatcagtcaatggaatgtgtttcta 416
Query: 360 acaatgagcttgatatcctctgtgtagctcagccacactgtcggctttgggagggcttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acaatgagcttgatatcctctgtgtagctcagccacactgtcggctttgggagggcttat 356
Query: 420 ttgtgttaagggatcagagactacaagttaagtggtgcatcctcagagatacaatttcaa 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 355 ttgtgttaagggatcagagactacaagttaagtggcgcatcctcagagatacaatttcaa 296
Query: 480 caaacagcattatgaaaattgacaaggaacaaaaaaccatgatatatcaaactgaaacat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caaacagcattatgaaaattgacaaggaacaaaaaaccatgatatatcaaactgaaacat 236
Query: 540 tcaaaaccctgaatttatgttctcagcgtttctta 574
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tcaaaaccctgaatttatgttctcagcgtttctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
