Query= MSMg01no354_o15.b1 MSMg01no354_o15.b1 CHROMAT_FILE:
MSMg01no354_o15.b1 PHD_FILE: MSMg01no354_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:13 2005
(611 letters)
>mm_chr6_77020170_77021180
Length = 1011
Score = 1143 bits (591), Expect = 0.0
Identities = 603/607 (99%)
Strand = Plus / Minus
Query: 5 gaattctcttcctttgtattgctgagggagcattcctttgtgtatcactctgctctgagg 64
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 811 gaattctcttcttttgtattgctgagggagcattcctttgtgtatcaccctgctctgagg 752
Query: 65 actgctctctatcccaggtttacatagagtcatccacaagcacatgaacattacacacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 actgctctctatcccaggtttacatagagtcatccacaagcacatgaacattacacacac 692
Query: 125 ctactccagttggtgtttggtgtagacattggcaaaccttggtagacttttgttattctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctactccagttggtgtttggtgtagacattggcaaaccttggtagacttttgttattctg 632
Query: 185 atatttctgaaacctgagaccacacatgcatgccacaatagggcttgctggaagcgtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atatttctgaaacctgagaccacacatgcatgccacaatagggcttgctggaagcgtttt 572
Query: 245 ttaaggtcagaaagaccagtgaccactttctcatttgattcagttaaaatatatagatga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttaaggtcagaaagaccagtgaccactttctcatttgattcagttaaaatatatagatga 512
Query: 305 gatattcaaatctgagctgtcaggagtgtgcttattttcttttaaaacctcataacagag 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 511 gatattcaaatctgagctgtcagaagtgtgcttattttcttttaaaacctcataacagag 452
Query: 365 agaccatttgtttaccttgtttatattaagggaaattcacagagaaacctggtccaagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agaccatttgtttaccttgtttatattaagggaaattcacagagaaacctggtccaagca 392
Query: 425 gaacagagggaagaaatatcttcccagaaattgaggacttaagcttattgaaaatggcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaacagagggaagaaatatcttcccagaaattgaggacttaagcttattgaaaatggcag 332
Query: 485 tcgttttcagaactcaagattctgagcctatgtggtctgtctcaggaaaatccaaaagga 544
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctttttcagaactcaagattctgagcctatgtggtctgtctcaggaaaatccaaaagga 272
Query: 545 cacctacttggtcttgttttgtttctttcttgactttgtgtgtctctgtctctgcctttc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cacctacttggtcttgttttgtttctttcttgactttgtgtgtctctgtctctgcctttc 212
Query: 605 ctaccat 611
|||||||
Sbjct: 211 ctaccat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_o15.g1 MSMg01no354_o15.g1 CHROMAT_FILE:
MSMg01no354_o15.g1 PHD_FILE: MSMg01no354_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:13 2005
(569 letters)
>mm_chr6_76997029_76997992
Length = 964
Score = 1038 bits (537), Expect = 0.0
Identities = 558/569 (98%), Gaps = 9/569 (1%)
Strand = Plus / Plus
Query: 1 aatatgaataatgtcccccacatgcacacacgcgcacgtatgcgtgcgtgtacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 aatatgaataatgtcccccacatgcacacacgcgcacgtatgcgtgcgtgt----acaca 260
Query: 61 cacacacacacacacacacacacacacacacacacacacacgggagtgagagagaacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 cacacacacacacacacacacacacacacacacacacacacgggagtgagagagagcagg 320
Query: 121 ggaggtataaataaaggctaaactgaattcccgagttaacttaaccccattaaaatggaa 180
|||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 321 ggaggtataaataaaggctaaactgaattcccgagt----tt-accccattaaaacggaa 375
Query: 181 cagcaaaccactgctctagataatcaatggaatgtccacaggctgttacaggtttaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagcaaaccactgctctagataatcaatggaatgtccacaggctgttacaggtttaagtt 435
Query: 241 gttttcttctcctaagaaactcctgcctgctctttgttcattttcttgttttgcttgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttttcttctcctaagaaactcctgcctgctctttgttcattttcttgttttgcttgttt 495
Query: 301 tcagctcattggttaaataacagtatgttccattatttttattgaaaaacatttattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcagctcattggttaaataacagtatgttccattatttttattgaaaaacatttattaaa 555
Query: 361 atgaaaggttaaaaccccacttgctttccacctccctggaaccacatatggattatgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgaaaggttaaaaccccacttgctttccacctccctggaaccacatatggattatgtca 615
Query: 421 cacaactctggtatcttgaaatttgaaaaatgttacagtttaaggggactgcctgacctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cacaactctggtatcttgaaatttgaaaaatgttacagtttaaggggactgcctgacctt 675
Query: 481 tccattcattatttctattcacaagatgttgatcaggctgtcaggaggttggtcctggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tccattcattatttctattcacaagatgttgatcaggctgtcaggaggttggtcctggct 735
Query: 541 acaggctctgggatgaatatcatttgacc 569
|||||||||||||||||||||||||||||
Sbjct: 736 acaggctctgggatgaatatcatttgacc 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 964
Length adjustment: 10
Effective length of query: 559
Effective length of database: 954
Effective search space: 533286
Effective search space used: 533286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
