BAC Information

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BAC

Clone NameMSMg01-354P14
Chromosome6 (Build37)
Map Location 145,056,045 - 145,239,017
singlet/doubletdoublet
Overlap geneLrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866
Upstream geneSox5, 4933425H06Rik, EG665149, Bcat1
Downstream geneLOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354P14.T7 (MSMg01no354_p14.b1)MSMg01-354P14.TJ (MSMg01no354_p14.g1)
ACCAG465473AG465474
length775753
length of high quality
(start - end)		370 (48 - 417)556 (77 - 632)
definitionCHROMAT_FILE: MSMg01no354_p14.b1 PHD_FILE: MSMg01no354_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:17 2005CHROMAT_FILE: MSMg01no354_p14.g1 PHD_FILE: MSMg01no354_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,056,045 - 145,056,410)(145,238,509 - 145,239,017)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAAACCTCTATGTTTTATAATTTCAAGAGAATTCCTCCACCCC
CACCACTACCTTCCCTTCTCCTTGTTCTGCCCTGCTCACTCCAGCCCATG
GGTTTTTGGTTTTTTTGCTTTGTTTTATTTTTGTTTTTAAATTGATTTAT
TTGTTTCTTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTT
GAGCTCATGACCTCCCAAAGAGCCATCAGTGCTCTTAACTGCTGAGCCAT
CTCACCAGCCCTCAAGAGAATTTTTAAATATCATTAGTAATCACAGAATT
ACTAATTCTGTGAGATGTAACTAGAAGTCACTACAGCTGCCTCTACATAT
ATTTTAAGTTTTGCTAGAGTCCGGATGGCAAGTTCATAGGAACTGTGAGT
TATGCAGCAAGACCTTGTATGAGTGCCCGCTTGGCTGTACGTATTTCCCT
TTTCCTTTTTTATTTCCCCTTTTTACCCCTTTCTTTCCTTTACTTATTTT
TCCCTTCCCTTCTTCCTTTCTTTTCTCTTTTTTTTTTTCTCTTCCTCCCC
CCTCCTTTTTATTTTTTTCCCTTTTTCCCCCCCCTCCTTTTTTCTCTTCT
TTCCCCCCCTTCTTTTTTTCCACTTTTTTTCATTCTTTTTTTTTTTTCCT
TACTCCTTCTTCTTTTTCCCCTTTCACTTCTTTTCTTTCTTCTTTTTCTT
TTCCCCCCCTTTCTTCTTTTTCTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATCTCAGCCACATCAGGGCA
GGGATTACAAGTCCGAATCTGATTTTTAAAATGAGGGTTCTGGGGGTTTA
AACATGGATATTTATTTATTTATTTATTTTTAGTTTTTTGAGACAGGGTT
TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG
CCTCAAATTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAA
AGGCATATGCCACCATGTCCAGCCCAACATGAATCTTTATGATTGCAAAG
CAAACACTTGATTTTCTGAGCAGCCTTCTCCCCCTTGTTCCTATCATGAT
TATTGTTTTGTAATTAACATTACCTTTCAACAGCTGCCAATGTGTTTTAC
TGATTTTCACATGTAAATAATATGGAGCACATAGCCAGTGCTCCATAAAA
CAGAACTCTTTTTCCTTATATTTTTCTAATTGTTATATACTATAGAGGTC
ACAGGAGCTAACAAATAAAAATAAATTATCTGGGAGAACAGGATTTGGCA
GCTGTGGTCAGTGTTGGTTGTTAACTTGACAGACTCTAGAATCATGTGGG
AGATGGGTCTCTGGGCATGCTGGCGGGGTTATCTTGCTTTTGTTTTGCGA
TGTGTGAACATGTTTGGTCTTTCCTTGGGCAGGGCATTCTTGGCTTGTCC
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_p14.b1 MSMg01no354_p14.b1 CHROMAT_FILE:
MSMg01no354_p14.b1 PHD_FILE: MSMg01no354_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
         (370 letters)



>mm_chr6_145055841_145056610
          Length = 770

 Score =  708 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaacctctatgttttataatttcaagagaattcctccacccccaccactacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacctctatgttttataatttcaagagaattcctccacccccaccactacct 264

                                                                       
Query: 65  tcccttctccttgttctgccctgctcactccagcccatgggtttttggtttttttgcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccttctccttgttctgccctgctcactccagcccatgggtttttggtttttttgcttt 324

                                                                       
Query: 125 gttttatttttgtttttaaattgatttatttgtttcttattacagatggttgtgagccac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttttatttttgtttttaaattgatttatttgtttcttattacagatggttgtgagccac 384

                                                                       
Query: 185 catgtggttgctgggatttgagctcatgacctcccaaagagccatcagtgctcttaactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgtggttgctgggatttgagctcatgacctcccaaagagccatcagtgctcttaactg 444

                                                                       
Query: 245 ctgagccatctcaccagccctcaagagaatttttaaatatcattagtaatcacagaatta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagccatctcaccagccctcaagagaatttttaaatatcattagtaatcacagaatta 504

                                                                       
Query: 305 ctaattctgtgagatgtaactagaagtcactacagctgcctctacatatattttaagttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaattctgtgagatgtaactagaagtcactacagctgcctctacatatattttaagttt 564

                 
Query: 365 tgctag 370
           ||||||
Sbjct: 565 tgctag 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_p14.g1 MSMg01no354_p14.g1 CHROMAT_FILE:
MSMg01no354_p14.g1 PHD_FILE: MSMg01no354_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:17 2005
         (556 letters)



>mm_chr6_145238062_145239017
          Length = 956

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Minus

                                                                       
Query: 48  ttttaaaatgagggttctgggggtttaaacatggatatttatttatttatttatttttag 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 ttttaaaatgagggttctgggggtttaaacatggatatttatttatttatttatttttag 897

                                                                       
Query: 108 ttttttgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagacc 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ttttttgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagacc 837

                                                                       
Query: 168 aggctggcctcaaattcagaaatctgcctgcctctgcctcccgagtgctgggattaaagg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aggctggcctcaaattcagaaatctgcctgcctctgcctcccgagtgctgggattaaagg 777

                                                                       
Query: 228 catatgccaccatgtccagcccaacatgaatctttatgattgcaaagcaaacacttgatt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 catatgccaccatgtccagcccaacatgaatctttatgattgcaaagcaaacacttgatt 717

                                                                       
Query: 288 ttctgagcagccttctcccccttgttcctatcatgattattgttttgtaattaacattac 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttctgagcagccttctcccccttgttcctatcatgattattgttttgtaattaacattac 657

                                                                       
Query: 348 ctttcaacagctgccaatgtgttttactgattttcacatgtaaataatatggagcacata 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctttcaacagctgccaatgtgttttactgattttcacatgtaaataatatggagcacata 597

                                                                       
Query: 408 gccagtgctccataaaacagaactctttttccttatatttttctaattgttatatactat 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gccagtgctccataaaacagaactctttttccttatatttttctaattgttatatactat 537

                                                                       
Query: 468 agaggtcacaggagctaacaaataaaaataaattatctgggagaacaggatttggcagct 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 agaggtcacaggagctaacaaataaaaataaattatctgggagaacaggatttggcagct 477

                                        
Query: 528 gtggtcagtgttggttgttaacttgacag 556
           |||||||||||||||||||||||||||||
Sbjct: 476 gtggtcagtgttggttgttaacttgacag 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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