Query= MSMg01no355_a07.b1 MSMg01no355_a07.b1 CHROMAT_FILE:
MSMg01no355_a07.b1 PHD_FILE: MSMg01no355_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:21 2005
(492 letters)
>mm_chr6_30989298_30990189
Length = 892
Score = 864 bits (447), Expect = 0.0
Identities = 485/509 (95%), Gaps = 20/509 (3%)
Strand = Plus / Plus
Query: 4 ggaattcactaggtaaaccagactgacctgaaattcacagacctggtgctggcctcagag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggaattcactaggtaaaccagactgacctgaaattcacagacctggtgctggcctcagag 256
Query: 64 -------tcaccaacacccagctgagtctactcattttcatccatttatcactctgatca 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtgtgagtcaccaacacccagctgagtctactcattttcatccatttatcactctgatca 316
Query: 117 taagcgtttccttcactgttcacatgttccccaacactgtctgtgctcatagaccatgaa 176
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taagcatttccttcactgttcacatgttccccaacactgtctgtgctcatagaccatgaa 376
Query: 177 gccagggatggggaaggctgggagccgggatacgaacaaagcagggacatgcactgtgag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gccagggatggggaaggctgggagccgggatacgaacaaagcagggacatgcactgtgag 436
Query: 237 gatatcaggaaacaacacccgggcttagcattccagaaacaggaattaaaaagaatgtag 296
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatatcaggaaacaacgcccgggcttagcattccagaaacaggaattaaaaagaatgtag 496
Query: 297 aggatagaagacatcagtgtgtccatccttagaaaatacgcgagagaggtagaggcaggc 356
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 aggatagaagacatcactgtgtccatccttagaaaatacacgagagaggtagaggcaggc 556
Query: 357 agatttctgagttcgaggccagactggtctacagagtgagttccaggacagccagggcta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agatttctgagttcgaggccagactggtctacagagtgagttccaggacagccagggcta 616
Query: 417 cacagagaaaccctgtctcgaaaaacaaacaaacaaacaaacaa------------gaac 464
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 617 cacagagaaaccctgtctcgaaaaacaaacaaacaaacaaacaaacaaacaaacaagaac 676
Query: 465 aagaggggggg-ctggaaagatggctcag 492
||||||||||| |||||||||||||||||
Sbjct: 677 aagaggggggggctggaaagatggctcag 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_a07.g1 MSMg01no355_a07.g1 CHROMAT_FILE:
MSMg01no355_a07.g1 PHD_FILE: MSMg01no355_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:21 2005
(448 letters)
>mm_chr6_31075201_31076047
Length = 847
Score = 820 bits (424), Expect = 0.0
Identities = 442/448 (98%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 tctctttgaacgaggtggttggttgcatcagagaggcatttacagtaaatggctccccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tctctttgaacgaggtggttggttgcatcagagaggcatttacagtaaatggctccccct 588
Query: 61 tcctgtgctggccacatgcgaaagaatgctctaattcttgttttgaggaagcaggagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tcctgtgctggccacatgcgaaagaatgctctaattcttgttttgaggaagcaggagcta 528
Query: 121 tacagctctgaaaactccctggtctcattaaatagccagatttgaatcttaaaatttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tacagctctgaaaactccctggtctcattaaatagccagatttgaatcttaaaatttttt 468
Query: 181 tcaagttggaatcactttgtgctccctaaataaatggcgcagagagagaaagctttccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcaagttggaatcactttgtgctccctaaataaatggcgcagagagagaaagctttccac 408
Query: 241 tccctatattctgtctggagcgcctgatcgttcccagttcagaaagaggaaatggcattg 300
|||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 407 tcccga-attctgtctggagcgcctgatagttcccagttcagaaagaggaaatggcattg 349
Query: 301 aatatagatgtagtgacgaaggtctaaagtaagttcttcacagccattttgtattctggc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 348 aatatagatgtagtgacgaaggtctaaagtaagttcttcacagccattttgtattccggc 289
Query: 361 catctgcttcttaggtgtgtgggtgcttggtctttggtgccctggttctcagtgcgatcc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 catctgcttcttaggtgtatgggtgcttggtctttggtgccctggttctcagtgcgatcc 229
Query: 421 catagctctttgccgaggttctcaggaa 448
| ||||||||||||||||||||||||||
Sbjct: 228 cgtagctctttgccgaggttctcaggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
