Query= MSMg01no355_g16.b1 MSMg01no355_g16.b1 CHROMAT_FILE:
MSMg01no355_g16.b1 PHD_FILE: MSMg01no355_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:52 2005
(553 letters)
>mm_chr6_5604217_5605169
Length = 953
Score = 957 bits (495), Expect = 0.0
Identities = 531/551 (96%), Gaps = 15/551 (2%)
Strand = Plus / Minus
Query: 5 gaattcttaataggtgagagagatgacattgttgaaagtcactggaggttgtggcaatgt 64
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcttaaaaggcgagagagatgacattgttgaaagtcactggaggttgtggcaa--- 754
Query: 65 cttatacctgtcttatacctgtagtagcagtgttggcacataaaattgatgtgtgtgagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 --------tgtcttatacctgtagtagcagtgttggcacataaaattgatgtgtgtgagg 702
Query: 125 gacatcccaagcaaggtgatacagactgcagacttcgagtagtctgccagaccacaaggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gacatcccaagcaaggtgatacagactgcagacttcgagtagtctgccagaccacaaggt 642
Query: 185 agttctcatgttcatgctattaacagcaaatcaaggaagaatgagggggagtggctttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agttctcatgttcatgctattaacagcaaatcaaggaagaatgagggggagtggctttct 582
Query: 245 ttttctagatacagatctagggtgtagccagctgtgactgccatctgcacaagggaatca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttttctagatacagatctagggtgtagccagctgtgactgccatctgcacaagggaatca 522
Query: 305 tgtgtgccaggagctattgcagagaggtgagtcggtaaaggttagcagggacaaagaagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtgtgccaggagctattgcagagaggtgagtcggtaaaggttagcagggacaaagaagc 462
Query: 365 aggaggtggcttgaattgcagttaagacagatgcaagggccattaaggttgatggtggaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aggaggtggcttgaattgcagttaagacagatgcaagggccattaaggttgatggtggaa 402
Query: 425 ctcaggtggaaattcctaagcaagtactgacatctttgagaagaaaaaaaatggatagtg 484
|||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct: 401 ctcaggtggaaattcctaagcaaggactgacgtctttgagaa--aaaaaaatggatagtg 344
Query: 485 at--gaagcccttatgagatgttttccaggcacttgagtgcattttctatcagcatccac 542
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atatgaagcccttatgagatgttttccaggcacttgagtgcattttctatcagcatccac 284
Query: 543 atcatttcgtg 553
|||||| ||||
Sbjct: 283 atcattccgtg 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_g16.g1 MSMg01no355_g16.g1 CHROMAT_FILE:
MSMg01no355_g16.g1 PHD_FILE: MSMg01no355_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:52 2005
(510 letters)
>mm_chr6_5432856_5433765
Length = 910
Score = 986 bits (510), Expect = 0.0
Identities = 510/510 (100%)
Strand = Plus / Plus
Query: 1 taggaaacgtgcattgccaagcagttactgaataaatacttgtaggtaaacatgtttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggaaacgtgcattgccaagcagttactgaataaatacttgtaggtaaacatgtttagt 260
Query: 61 tctatttgttcatggagcatatacaaacaagaaaaagacaaccacaatttctgtactact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatttgttcatggagcatatacaaacaagaaaaagacaaccacaatttctgtactact 320
Query: 121 ctaaaacacttttgttttaaaaataggatgttaaagttgcttttaatacttttcaaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaaacacttttgttttaaaaataggatgttaaagttgcttttaatacttttcaaagcc 380
Query: 181 tatgccaaatgtgtagatgagttatatctaaagaaaaatatgaggaccgcctttagttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgccaaatgtgtagatgagttatatctaaagaaaaatatgaggaccgcctttagttga 440
Query: 241 tatcgttcattatactttgagattattcaagaaaagaattttataagaccacattactat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcgttcattatactttgagattattcaagaaaagaattttataagaccacattactat 500
Query: 301 tataataaaaatatttattataaaattatcacaattctttgcatataaactaaaaacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataataaaaatatttattataaaattatcacaattctttgcatataaactaaaaacata 560
Query: 361 aatgtaattcacacattaataagttaagtgggcctgggcatttagcatctatctacaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtaattcacacattaataagttaagtgggcctgggcatttagcatctatctacaaga 620
Query: 421 gtttaaagtctcccatgggttcataaataatagggaaggctattttgatttgatttacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttaaagtctcccatgggttcataaataatagggaaggctattttgatttgatttacac 680
Query: 481 aggtgacactattgagaccctaaagctttt 510
||||||||||||||||||||||||||||||
Sbjct: 681 aggtgacactattgagaccctaaagctttt 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
