BAC Information

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BAC

Clone NameMSMg01-355I09
Chromosome6 (Build37)
Map Location 62,584,009 - 62,584,306
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355I09.T7 (MSMg01no355_i09.b1)MSMg01-355I09.TJ (MSMg01no355_i09.g1)
ACCAG465891AG465892
length754775
length of high quality
(start - end)
426 (43 - 468)471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no355_i09.b1 PHD_FILE: MSMg01no355_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:00 2005CHROMAT_FILE: MSMg01no355_i09.g1 PHD_FILE: MSMg01no355_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCTTTTTACTAGCTGAGTAGTACTCCATTGTGTAAATGTACCACAT
TTTTTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTC
TGGCTATTATAAATAAGGCTTCTATGAACATAGTGGAGCATGTGTCCTTC
TTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATTGTGGG
ATCCTCCGGTAGTACTATGTCCAATTTTCTGAGTAACCGCCATACTGATT
TCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTT
CCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTTAT
CTTAGCCATTCTGACTGGTGTGAGATGTAATCTCAGGGTTGTTTTGATTT
GCATTTCTCTGATGATTAAGGACGCTGAGCAATTTTTCAGGTGTTTCTCA
GCCTCTTGTTATTCCTCTGTTGAGAACTCTTTGTTCACCTCTGATTTCCT
TCTTTTAAGGTGGCTATTTGACTTTCCGTTTATCATTCTTTTCATTACTT
TCTATCTTTGGATATTAGTCCCTCTATCCTGATTTACATAGATGTTGATA
CCCTTTTTTTATCCTTAGTTGTCCTTTCTCCCCATTACACCTCGCATTTT
TTTCTTTTACCCCCCCCCCCCCCCCTGTCTTCTCCTCCCCTTTCCCCCCC
TCTT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTATTGGTGACATCAGTGCTTTA
ATGGGTTCAAATAGAATTACTAACTAGCCTATAATTAAAAGGTTAGGTAA
AATTAGTGCTCATTTAAAAAACATGGTTTTAAATTTTTACTTCATCATAA
AAAACATTGTAATTTAGGAATTCAGTTGTAACTCTAAGTAAATCAATGAG
TTGAAGTACTGGCTTTAGGTGGTATCATTGTTTTATTTGTTTGTTATTTT
AATATTTTACCTGTTTTTATTGTTCGATTACTTCATTTTCTTTGCTGTTA
GTGGGACATTTGCTTTTGTTAGAGCATGTTAACAGCAAAGAAAACTCAAC
ACACTGTCTTATTTCAAATCCATTTTTCTTCTTTTGTATTTAGACAGTTG
GGTAAATCTATTGCTAAACATATAAATCAATCATAAATTTTCCAAATGTA
TCATCTTTACAAAATAATGAATTTTTTTCTATCCTGTCCCGCATGATTCA
GTTATTCATGGGTGTGAGGTGAACCATCTACCTGTAATGAAATGGTATTG
TCATATAAACGATATCCTAGTACCCGCACAGAATATTCCTATTCTTGCTC
CCCCTTCCTTAGCCTTATATGCCTAGCTTTAAAGTATAATTTTTCTGGTA
CAATGTCAGTTTATTCGTTCTTAATTTTTTTCTCTAGATTATTAATGGTC
CTACCTTTTTACCATCTACTGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_i09.g1 MSMg01no355_i09.g1 CHROMAT_FILE:
MSMg01no355_i09.g1 PHD_FILE: MSMg01no355_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:00 2005
         (471 letters)



>mm_chr6_62583637_62584508
          Length = 872

 Score =  545 bits (282), Expect = e-159
 Identities = 294/298 (98%), Gaps = 1/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 173 tgagttgaagtactggctttaggtggtatcattgttttatttgtttgttattttaatatt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgagttgaagtactggctttaggtggtatcattgttttatttgtttgttattttaatatt 611

                                                                       
Query: 233 ttacctgtttttattgttcgattacttcattttctttgctgttagtgggacatttgcttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 610 ttacctgtttttattgttcgattacttcattttctttgctgttagtgagacatttgcttt 551

                                                                       
Query: 293 tgttagagcatgttaacagcaaagaaaactcaacacactgtcttatttcaaatccatttt 352
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgttagagcatgttaacagcaaacaaaactcaacacactgtcttatttcaaatccatttt 491

                                                                       
Query: 353 tcttcttttgtatttagacagttgggtaaatctattgctaaacatataaatcaatcataa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tcttcttttgtatttagacagttgggtaaatctattgctaaacatataaatcaatcataa 431

                                                                     
Query: 413 attttccaaatgtatcatctttacaaaataatgaa-tttttttctatcctgtcccgca 469
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 430 attttccaaatgtatcatctttacaaaataatgaattttttttctatcccgtcccgca 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)