Query= MSMg01no355_m21.b1 MSMg01no355_m21.b1 CHROMAT_FILE:
MSMg01no355_m21.b1 PHD_FILE: MSMg01no355_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:21 2005
(571 letters)
>mm_chr6_102443924_102444889
Length = 966
Score = 857 bits (443), Expect = 0.0
Identities = 509/535 (95%), Gaps = 13/535 (2%)
Strand = Plus / Minus
Query: 41 tggggttatttgcttttctggagtctaatttctacagttctttatatattttgattatta 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tggggttatttgcttttctggagtctaatttctacagttctttatatattttgattatta 907
Query: 101 gccctctattggatgtagagttaataaatattttttctcaatctgtaggttgacattttg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gccctctattggatgtagagttaataaatattttttctcaatctgtaggttgacattttg 847
Query: 161 tcctattgacagcaacctttgctttacagaagatttt-cagtttcatgaagtcccattca 219
|||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 846 tcctattgacagcatcctttgccttacagaagattttcca-tttcatgaagtcccattca 788
Query: 220 tgaaagtgttgagtagatcctagtctggttgcacgtttaactctgcatttgtttgtatgc 279
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgaaagtgttgagtatatcctagtctggttgcacgtttaactctgcatttgtttgtatgc 728
Query: 280 ttatagttttgagataaaagaacttaggagactttgtgaggggcattgttgaagaagtgc 339
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct: 727 ttatagttttgagataaaagaacttagaagactttgtgaggggcattattgaagaagttc 668
Query: 340 aacttattctctgttcataaaatgtgaatac---atgtaggtaaacattataaaacaata 396
|| |||||||||||||||||||||||||||| |||| | || ||||||| ||||
Sbjct: 667 aagttattctctgttcataaaatgtgaatacaaaatgt--g--aa---tataaaataata 615
Query: 397 ttgaatatcttgttcattgaatgtaccaatgtgggggattttaccaggataatttaaacc 456
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 614 ttgaatatcttgttcattgaatgtaccaatgtggggg-ttttaccaggataatttaaacc 556
Query: 457 attttcacctggaaagtatttttgcttatccatgtccattcattttccctgagtctgtat 516
|||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 555 gtttttacctggaaagtatttttgcttatccatatccattcattttctctgagtctgtat 496
Query: 517 tttcctcttcctttagttcagatcttactctggtatcttataacatttaatacat 571
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttcctcttccttcagttcagatcttactctggtatcttataacatttaatacat 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 966
Length adjustment: 10
Effective length of query: 561
Effective length of database: 956
Effective search space: 536316
Effective search space used: 536316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_m21.g1 MSMg01no355_m21.g1 CHROMAT_FILE:
MSMg01no355_m21.g1 PHD_FILE: MSMg01no355_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:21 2005
(462 letters)
>mm_chr6_102268961_102269823
Length = 863
Score = 862 bits (446), Expect = 0.0
Identities = 459/464 (98%), Gaps = 3/464 (0%)
Strand = Plus / Plus
Query: 1 tttttatcctgtatacaatttcccttaacttcaaatggtatctttctttaaaaaaatcta 60
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tttttatcctgtatacaacttcccttaacttcaaatggtatctttcttt-aaaaaatcta 259
Query: 61 taatttccccaaatgg--aaaaagaaaagctacacataaatgtatgtgttcacttatgca 118
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 taatttccccaaatggaaaaaaaaaaaagctacacataaatgtatgtgttcacttatgca 319
Query: 119 aagataacagctatcatatgaagaacaacagcattatctctcattgcatataattatctt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagataacagctatcatatgaagaacaacagcattatctctcattgcatataattatctt 379
Query: 179 gtttctgctagagtaagaagcaataatgaaaagatcggaagagaattataacaaagaaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttctgctagagtaagaagcaataatgaaaagatcggaagagaattataacaaagaaca 439
Query: 239 tgtgctgattgattcgttcaggaattgaaatggcaactgtactttgttacactgcctgtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtgctgattgattcgttcaggaattgaaatggcaactgtactttgttacactgcctgtt 499
Query: 299 gacgattatacaaaagcatacactcagttactttccaaacctgcgactctaaataatgat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacgattatacaaaagcatacactcagttactttccaaacctgcgactctaaataatgat 559
Query: 359 aaatttgaacacttcgttctttcttttatttgaatgcctaggctttaattccagcatgaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatttgaacacttcgttctttcttttatttgaatgcctaggctttaattccagcatgaa 619
Query: 419 aacaagtatttccctatttgtctatttaatgctttatgaagaaa 462
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacaagtatttccctatttgtctatttaatgctttatgaagaaa 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
