BAC Information

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BAC

Clone NameMSMg01-356B06
Chromosome6 (Build37)
Map Location 129,773,806 - 129,774,320
singlet/doubletsinglet
Overlap genenone
Upstream geneKlrb1d, LOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156
Downstream geneKlra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356B06.T7 (MSMg01no356_b06.b1)MSMg01-356B06.TJ (MSMg01no356_b06.g1)
ACCAG466310AG466311
length766763
length of high quality
(start - end)		597 (40 - 636)515 (72 - 586)
definitionCHROMAT_FILE: MSMg01no356_b06.b1 PHD_FILE: MSMg01no356_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:42 2005CHROMAT_FILE: MSMg01no356_b06.g1 PHD_FILE: MSMg01no356_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CATCACAAACCCAATGACAAAAATCACAGAAGAAAAATCACCTCATCTCA
TCTCTAAAAATCAGTTGTGAATATTTTCATCCTAACTGATAGATTGTAAA
AGAACTAGATATCACGTGATAATCTATATCAGGGATCTTAAAATATGTAT
CTCCTTGAATCCCATGACTTCATGCATAAACTATCTTTCTTATTATTTTC
TAAAGACAGGAAAGAGTGAGGCCAGAGGACTGTGAGTGTGAGAGCAGCTT
GTGATCCATAGCAAAGTACAACTATCTCAAAACAACAACAAGAACCACAA
CATCAAAAATAAACCAAAAGCAAAACGTCAGAAAAAAAGCAAACTGAGGC
ATGAGTCTATAGCCCAGGGATAAAGTATTTGCTGAGCATGCTCAGTGTCT
TAGAGTTGATAGCCCAGTACCATGAAAATATCAGCAGTAAACCACTCCAT
GTGGAATGACATCACTGTTCACAGTCTATCTTACCTATGATTAAAAATCT
AGAAGCATGTACAGGCAGAATTTACCAGTGGAAATGTGCTTTANAGGCAT
TTCTAATAAACACTAAGATTCATTAACACGATTCTNAATCNNAAAATAAA
TATAANAAATAGCAACCTAATAGAAGATTTCCCAAAGTTGATTAAAAAAT
TGTGAGCAGACAAGGTTAAGTCCCATCTTTTTCCCAATGATTTTGCTAAG
ACACAGGTTTTGCTCT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAAACACACAATGGGAAAAAGAAAGCAT
CTTCAAAATATGGTGCTGGTCTAACTGGATGACTAATTGCCTGTTTCTAA
CCTACAGTCTGTCTTATTTGAGATTACAATGACTATAGGGATAAGCAAAA
CTTGGAATGAGATCCCAGCAACAATTGGGCAACTGCTTTCTCAAAGTATA
CTTAAACCAATAGGAGAAATATGATATACAGTTAAATAACTAAAAGGTTC
TAGACAGTTTATAGCTCATCTATGCCATCTCCCTACCATCACAAGAATTG
ATTGGATATTTTAAAACACTGTATATAATGATTATGTAAAAATAAGATAT
AAAATCATAGCAGATATTTTCTGAGTGGTTAGCCTAACAGAGGAAAGGAA
GTGTCTGCTGGACTTAAGATGTTTGTACTAAACCACACAGGAAACCGCAG
ACTTAGGAGGTCATGTTTTGTAGACTACAAACCCAGAGTAGAGAACTTTT
CACACAAGGGGAAAGATGACCCTTACAAAAAAATGTCTCTTTTCTTCTTT
TCATCTATACCCTAGTAAAAGTTTAATATTTGAGAAGGGATATTATACAG
TGAAATTTCTGAAAGAATGTGGTATTGGTCCAAAATGGCTGATCATTAAA
AATATACTGCCTGTTTGTGGAAGAGACCTTAAAAAATAAGCTCCCCGGTT
CTCTAATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_b06.g1 MSMg01no356_b06.g1 CHROMAT_FILE:
MSMg01no356_b06.g1 PHD_FILE: MSMg01no356_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:42 2005
         (515 letters)



>mm_chr6_129773606_129774520
          Length = 915

 Score =  934 bits (483), Expect = 0.0
 Identities = 507/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaacacacaatgggaaaaagaaagcatcttcaaaatatggtgctggtctaactggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaacacacaatgggaaaaagaaagcatcttcaaaatatggtgctggtctaactggatg 260

                                                                       
Query: 61  actaattgcctgtttctaacctacagtctgtcttatttgagattacaatgactataggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaattgcctgtttctaacctacagtctgtcttatttgagattacaatgactataggga 320

                                                                       
Query: 121 taagcaaaacttggaatgagatcccagcaacaattgggcaactgctttctcaaagtatac 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taaacaaaacttggaatgagatcccagcaacaattgggcaactgctttctcaacgtatac 380

                                                                       
Query: 181 ttaaaccaataggagaaatatgatatacagttaaataactaaaaggttctagacagttta 240
           | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 381 tcaaaccaataggagaaatatgatatgcagttaaataactaacaggttctagacagttta 440

                                                                       
Query: 241 tagctcatctatgccatctccctaccatcacaagaattgattggatattttaaaacactg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tagctcatctatgccatctccctaccatcacaagaattgattggatattttaaagcactg 500

                                                                       
Query: 301 tatataatgattatgtaaaaataagatataaaatcatagcagatattttctgagtggtta 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatataaagattatgtaaaaataagatataaaatcatagcagatattttctgagtggtta 560

                                                                       
Query: 361 gcctaacagaggaaaggaagtgtctgctggacttaagatgtttgtactaaaccacacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctaacagaggaaaggaagtgtctgctggacttaagatgtttgtactaaaccacacagg 620

                                                                       
Query: 421 aaaccgcagacttaggaggtcatgttttgtagactacaaacccagagtagagaacttttc 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccgcagactcaggaggtcatgttttgtagactacaaacccagagtagagaacttttc 680

                                              
Query: 481 acacaaggggaaagatgacccttacaaaaaaatgt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 acacaaggggaaagatgacccttacaaaaaaatgt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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